Variant report

Variant	rs2323107
Chromosome Location	chr4:21780408-21780409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11936563	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11939307	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1450728	1.00[AMR][1000 genomes]
rs16871840	1.00[AMR][1000 genomes]
rs16871847	1.00[AMR][1000 genomes]
rs16871866	1.00[AMR][1000 genomes]
rs16871869	1.00[AMR][1000 genomes]
rs4550913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv878751	chr4:21712050-21793807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv4269	chr4:21761429-21806056	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21777000-21781200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:21780000-21781400	Enhancers	HepG2	liver
3	chr4:21780400-21780600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:21780400-21780800	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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