Variant report

Variant	rs1398836
Chromosome Location	chr4:21854712-21854713
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10000447	0.86[EUR][1000 genomes]
rs10011023	0.86[EUR][1000 genomes]
rs10033271	0.86[EUR][1000 genomes]
rs11736777	0.87[EUR][1000 genomes]
rs11936372	0.87[EUR][1000 genomes]
rs11945440	0.87[EUR][1000 genomes]
rs28368961	0.86[EUR][1000 genomes]
rs28613123	0.86[EUR][1000 genomes]
rs57893621	0.87[EUR][1000 genomes]
rs58370602	0.87[EUR][1000 genomes]
rs7677885	1.00[EUR][1000 genomes]
rs7691548	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21854000-21859600	Weak transcription	Ovary	ovary
2	chr4:21854200-21855000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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