Variant report

Variant	rs10000447
Chromosome Location	chr4:21859745-21859746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10011023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10033271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11736777	1.00[ASN][1000 genomes]
rs1398836	0.86[EUR][1000 genomes]
rs28368961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28397222	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs28613123	1.00[EUR][1000 genomes]
rs7677885	0.86[EUR][1000 genomes]
rs7691548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21859400-21859800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:21859600-21859800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:21859600-21859800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:21859600-21859800	Enhancers	Gastric	stomach
5	chr4:21859600-21859800	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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