Variant report

Variant	rs28397222
Chromosome Location	chr4:21860477-21860478
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10000447	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10011023	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10013811	0.88[AMR][1000 genomes]
rs10031856	0.88[AMR][1000 genomes]
rs10033271	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs28368961	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4697242	0.83[AMR][1000 genomes]
rs7691548	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs872995	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21859800-21861200	Weak transcription	Ovary	ovary
2	chr4:21860400-21860800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:21860400-21860800	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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