Variant report

Variant	rs1399144
Chromosome Location	chr13:61329803-61329804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1514157	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1514159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1546578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1849687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1999516	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1999518	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3106533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3106551	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3120236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3127028	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3127031	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3127032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs987104	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817223	chr13:60623429-61453435	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv900241	chr13:61217896-61368021	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832623	chr13:61303818-61468576	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1037954	chr13:61319533-61395907	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv561866	chr13:61328813-61388794	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61326000-61330200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:61326200-61330400	Weak transcription	Fetal Brain Female	brain
3	chr13:61327800-61331600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:61328000-61330800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr13:61328000-61330800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr13:61328000-61331000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr13:61328200-61330800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr13:61328200-61334400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr13:61328400-61330600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr13:61328400-61330600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr13:61328400-61330800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr13:61328400-61331000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr13:61328600-61330400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr13:61328800-61330000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr13:61329000-61330000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr13:61329000-61330800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr13:61329000-61333600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr13:61329000-61334000	Enhancers	Fetal Brain Male	brain
19	chr13:61329200-61330600	Enhancers	Fetal Heart	heart
20	chr13:61329200-61331200	Enhancers	Gastric	stomach
21	chr13:61329400-61330400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr13:61329400-61330400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr13:61329400-61330600	Enhancers	NHEK	skin
24	chr13:61329400-61330800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr13:61329400-61331000	Enhancers	Placenta Amnion	Placenta Amnion
26	chr13:61329400-61331200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr13:61329600-61330800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr13:61329600-61332200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr13:61329800-61330200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr13:61329800-61330400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr13:61329800-61330400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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