Variant report

Variant	rs1514159
Chromosome Location	chr13:61328990-61328991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1355901	0.92[AFR][1000 genomes]
rs1399144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1514157	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1546578	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17058772	0.81[AFR][1000 genomes]
rs17058859	0.81[AFR][1000 genomes]
rs1849687	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1999516	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1999518	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3106533	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3106551	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3120236	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3127028	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3127031	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3127032	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73539618	0.83[AFR][1000 genomes]
rs987104	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817223	chr13:60623429-61453435	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv900241	chr13:61217896-61368021	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832623	chr13:61303818-61468576	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1037954	chr13:61319533-61395907	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv561866	chr13:61328813-61388794	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61326000-61329000	Weak transcription	Fetal Brain Male	brain
2	chr13:61326000-61330200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:61326200-61330400	Weak transcription	Fetal Brain Female	brain
4	chr13:61327800-61331600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:61328000-61330800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr13:61328000-61330800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr13:61328000-61331000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr13:61328200-61329400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr13:61328200-61330800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr13:61328200-61334400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr13:61328400-61329000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr13:61328400-61330600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr13:61328400-61330600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr13:61328400-61330800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr13:61328400-61331000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr13:61328600-61329000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr13:61328600-61329000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
18	chr13:61328600-61329600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr13:61328600-61329800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr13:61328600-61330400	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr13:61328800-61329000	Enhancers	Primary hematopoietic stem cells	blood
22	chr13:61328800-61329400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr13:61328800-61329600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr13:61328800-61330000	Weak transcription	H9 Cell Line	embryonic stem cell

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