Variant report

Variant	rs1400008
Chromosome Location	chr2:182968268-182968269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1196077	0.81[EUR][1000 genomes]
rs13414766	0.83[EUR][1000 genomes]
rs1400007	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1515894	0.82[EUR][1000 genomes]
rs1515895	0.82[EUR][1000 genomes]
rs1515898	0.83[EUR][1000 genomes]
rs1882211	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1882212	0.81[AFR][1000 genomes]
rs1985479	0.83[EUR][1000 genomes]
rs1997443	0.81[EUR][1000 genomes]
rs1997444	0.81[EUR][1000 genomes]
rs1999	0.81[YRI][hapmap]
rs2116638	0.81[EUR][1000 genomes]
rs3731690	0.83[EUR][1000 genomes]
rs4666576	0.82[EUR][1000 genomes]
rs56340996	0.82[EUR][1000 genomes]
rs6711862	0.84[YRI][hapmap]
rs7607642	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs983403	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875478	chr2:182960289-182998122	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182958200-182969800	Weak transcription	Thymus	Thymus
2	chr2:182965800-182968600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:182966600-182970800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:182966800-182996400	Weak transcription	Fetal Thymus	thymus
5	chr2:182967600-182969400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:182968000-182968600	Enhancers	Brain Substantia Nigra	brain
7	chr2:182968200-182968400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr2:182968200-182968400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr2:182968200-182968400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr2:182968200-182968400	Enhancers	Psoas Muscle	Psoas
11	chr2:182968200-182968600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr2:182968200-182968800	Enhancers	Brain Anterior Caudate	brain
13	chr2:182968200-182969000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:182968200-182969000	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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