Variant report

Variant	rs1882212
Chromosome Location	chr2:182981968-182981969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:182976792..182978439-chr2:182980640..182982380,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10181222	0.88[CEU][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs10181420	0.88[CEU][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs10193834	0.88[CEU][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs10197864	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs10205020	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs10451546	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11686047	0.87[EUR][1000 genomes]
rs11694699	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11899083	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12473915	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12474446	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13398100	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1400003	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1400004	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1400008	0.83[LWK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs1432524	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1515897	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16822592	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17648960	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1878093	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1921149	0.87[EUR][1000 genomes]
rs1921150	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs1921151	0.88[CEU][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs1921152	0.88[CEU][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs1999	0.81[YRI][hapmap]
rs2163697	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2195879	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3731689	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4666813	0.87[CEU][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs4666814	0.88[CEU][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs60286884	0.87[EUR][1000 genomes]
rs6433954	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6711862	0.84[YRI][hapmap]
rs6732308	0.87[EUR][1000 genomes]
rs6744499	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs6748404	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6760627	0.87[EUR][1000 genomes]
rs6760977	0.87[EUR][1000 genomes]
rs73040730	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7558141	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7558159	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs7558558	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7567207	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs7593639	0.87[EUR][1000 genomes]
rs7593912	0.88[CEU][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs7600720	0.89[CEU][hapmap]
rs7606356	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs768742	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9288078	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs953267	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs998617	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875478	chr2:182960289-182998122	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1882212	PPP1R1C	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182966800-182996400	Weak transcription	Fetal Thymus	thymus
2	chr2:182981600-182984000	Weak transcription	Liver	Liver

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