Variant report

Variant	rs1878093
Chromosome Location	chr2:182974957-182974958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10181222	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10181420	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10193834	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10197864	0.94[CEU][hapmap];0.97[EUR][1000 genomes]
rs10205020	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10451546	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1107901	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11686047	0.97[EUR][1000 genomes]
rs11694699	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11899083	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12473915	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12474446	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13395225	0.82[CEU][hapmap]
rs13398100	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1400003	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1400004	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1432524	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1515891	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1515897	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16822592	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17648960	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1882212	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1921149	0.97[EUR][1000 genomes]
rs1921150	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1921151	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1921152	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1962724	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2163697	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2195879	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2368292	0.80[AFR][1000 genomes]
rs3731689	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4666813	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs4666814	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs60286884	0.97[EUR][1000 genomes]
rs6433954	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6732308	0.97[EUR][1000 genomes]
rs6744499	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs6748404	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6760627	0.97[EUR][1000 genomes]
rs6760977	0.97[EUR][1000 genomes]
rs73040730	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7558141	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7558159	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs7558558	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7567207	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs7593639	0.97[EUR][1000 genomes]
rs7593912	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs7600720	0.80[CEU][hapmap]
rs7606356	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs768742	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9288078	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs953267	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs998617	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875478	chr2:182960289-182998122	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182966800-182996400	Weak transcription	Fetal Thymus	thymus
2	chr2:182974000-182975200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:182974400-182975200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:182974400-182975600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:182974400-182975800	Enhancers	Cortex derived primary cultured neurospheres	brain

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