Variant report

Variant	rs9288078
Chromosome Location	chr2:182962353-182962354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:62082104..62083680-chr2:182961228..182962748,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10181222	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs10181420	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs10193834	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs10197864	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs10205020	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs10451546	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1107901	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1107902	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11686047	0.86[EUR][1000 genomes]
rs11899083	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12473915	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12474446	0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13395225	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs13398100	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13420407	0.85[EUR][1000 genomes]
rs1400003	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1400004	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432524	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1515891	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1515897	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16822592	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17648960	0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1878093	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1882212	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1921149	0.86[EUR][1000 genomes]
rs1921150	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1921151	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs1921152	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs1962724	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2163697	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2195879	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2368291	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2368292	0.89[EUR][1000 genomes]
rs3731689	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4666813	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs4666814	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs60286884	0.86[EUR][1000 genomes]
rs6433954	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6732308	0.86[EUR][1000 genomes]
rs6744499	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs6748404	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6760627	0.86[EUR][1000 genomes]
rs6760977	0.86[EUR][1000 genomes]
rs73040730	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7558141	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7558159	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs7558558	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7567207	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs7593639	0.86[EUR][1000 genomes]
rs7593912	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs7600720	0.85[CEU][hapmap]
rs7606356	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs768742	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs953267	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs998617	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875478	chr2:182960289-182998122	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182954200-182968200	Weak transcription	Psoas Muscle	Psoas
2	chr2:182958200-182969800	Weak transcription	Thymus	Thymus
3	chr2:182962200-182962400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:182962200-182964000	Enhancers	Rectal Mucosa Donor 31	rectum

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