Variant report

Variant	rs7600720
Chromosome Location	chr2:182963814-182963815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10205020	0.80[CEU][hapmap]
rs1107901	0.87[EUR][1000 genomes]
rs1107902	0.87[EUR][1000 genomes]
rs12474446	0.83[CEU][hapmap]
rs1515891	0.87[EUR][1000 genomes]
rs1921150	0.88[CEU][hapmap]
rs1962724	0.89[EUR][1000 genomes]
rs2368291	0.87[EUR][1000 genomes]
rs2368292	0.88[EUR][1000 genomes]
rs6744499	0.80[CEU][hapmap]
rs7558141	0.86[CEU][hapmap]
rs7558159	0.80[CEU][hapmap]
rs7567207	0.80[CEU][hapmap]
rs998617	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875478	chr2:182960289-182998122	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182954200-182968200	Weak transcription	Psoas Muscle	Psoas
2	chr2:182958200-182969800	Weak transcription	Thymus	Thymus
3	chr2:182962200-182964000	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr2:182962400-182967600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:182963400-182964200	Enhancers	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links