Variant report

Variant	rs2368292
Chromosome Location	chr2:182956735-182956736
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:182950076..182952540-chr2:182953657..182957078,3	MCF-7	breast:
2	chr2:182944117..182946257-chr2:182954795..182956782,2	MCF-7	breast:
3	chr2:182955166..182957496-chr2:182959332..182961778,2	K562	blood:
4	chr2:182948690..182951335-chr2:182955007..182957833,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10181222	0.88[CEU][hapmap]
rs10181420	0.88[CEU][hapmap]
rs10193834	0.88[CEU][hapmap]
rs10197864	0.84[CEU][hapmap]
rs10205020	0.89[CEU][hapmap]
rs1107901	0.98[AFR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1107902	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11899083	0.81[EUR][1000 genomes]
rs12474446	0.94[CEU][hapmap]
rs13395225	0.83[CEU][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13398100	0.82[EUR][1000 genomes]
rs13420407	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1400003	0.97[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1400004	0.89[EUR][1000 genomes]
rs1432524	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1515891	0.98[AFR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1515897	0.83[AFR][1000 genomes]
rs16822592	0.83[AFR][1000 genomes]
rs17648960	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs1878093	0.80[AFR][1000 genomes]
rs1921150	0.94[CEU][hapmap]
rs1921151	0.88[CEU][hapmap]
rs1921152	0.88[CEU][hapmap]
rs1962724	0.95[AFR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2163697	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2195879	0.80[EUR][1000 genomes]
rs2368291	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3731689	0.81[AFR][1000 genomes]
rs4666813	0.87[CEU][hapmap]
rs4666814	0.88[CEU][hapmap]
rs6433954	0.82[AFR][1000 genomes]
rs6744499	0.89[CEU][hapmap]
rs6748404	0.88[EUR][1000 genomes]
rs73040730	0.83[AFR][1000 genomes]
rs7558141	0.92[CEU][hapmap]
rs7558159	0.89[CEU][hapmap]
rs7558558	0.88[EUR][1000 genomes]
rs7567207	0.89[CEU][hapmap]
rs7593912	0.88[CEU][hapmap]
rs7600720	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs7606356	0.80[EUR][1000 genomes]
rs768742	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9288078	0.89[EUR][1000 genomes]
rs953267	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182954200-182968200	Weak transcription	Psoas Muscle	Psoas

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