Variant report

Variant	rs140100277
Chromosome Location	chr15:43027927-43027928
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:43027826-43029760	GM12878	blood:	n/a	n/a
2	POLR2A	chr15:43027862-43029754	PANC-1	pancreas:	n/a	n/a
3	POLR2A	chr15:43027827-43029802	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:43019448..43022159-chr15:43025632..43028520,2	MCF-7	breast:
2	chr15:43014319..43018768-chr15:43027782..43030873,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000246283	TF binding region
CDAN1	TF binding region
ENSG00000140326	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv427959	chr15:42931181-43207353	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv457122	chr15:42948862-43062548	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv569238	chr15:42948862-43062548	Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv977054	chr15:43015821-43171355	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	esv3410012	chr15:43027685-43030233	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43011600-43028000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:43016200-43028000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:43018400-43028200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:43020200-43028000	Weak transcription	Right Atrium	heart
5	chr15:43023000-43028000	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr15:43023400-43028000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:43023600-43028400	Weak transcription	Small Intestine	intestine
8	chr15:43023800-43028000	Weak transcription	Psoas Muscle	Psoas
9	chr15:43024600-43028000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr15:43024800-43028200	Weak transcription	NH-A	brain
11	chr15:43025000-43028000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr15:43026200-43028000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr15:43026200-43028000	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:43026400-43028000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:43026400-43028200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr15:43026600-43028000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr15:43026600-43028000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr15:43026600-43028000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:43026600-43028000	Weak transcription	Primary B cells from peripheral blood	blood
20	chr15:43026600-43028000	Weak transcription	Aorta	Aorta
21	chr15:43026600-43028000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
22	chr15:43026600-43028000	Enhancers	GM12878-XiMat	blood
23	chr15:43026600-43028000	Genic enhancers	HepG2	liver
24	chr15:43026800-43028000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr15:43026800-43028000	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr15:43026800-43028000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr15:43026800-43028000	Weak transcription	Brain Substantia Nigra	brain
28	chr15:43026800-43028000	Genic enhancers	Fetal Stomach	stomach
29	chr15:43026800-43028000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr15:43026800-43028000	Genic enhancers	Stomach Smooth Muscle	stomach
31	chr15:43026800-43028000	Weak transcription	NHLF	lung
32	chr15:43026800-43028200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr15:43026800-43028200	Genic enhancers	Thymus	Thymus
34	chr15:43026800-43028400	Genic enhancers	Primary T cells fromperipheralblood	blood
35	chr15:43027000-43028000	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr15:43027200-43028000	Genic enhancers	Brain Angular Gyrus	brain
37	chr15:43027200-43028000	Genic enhancers	Fetal Muscle Leg	muscle
38	chr15:43027200-43028000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
39	chr15:43027200-43028200	Genic enhancers	Fetal Lung	lung
40	chr15:43027200-43028200	Transcr. at gene 5' and 3'	Dnd41	blood
41	chr15:43027200-43028400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr15:43027400-43028000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:43027400-43028000	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr15:43027400-43028000	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr15:43027400-43028000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr15:43027400-43028000	Weak transcription	Primary B cells from cord blood	blood
47	chr15:43027400-43028000	Weak transcription	Primary T cells from cord blood	blood
48	chr15:43027400-43028000	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr15:43027400-43028000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
50	chr15:43027400-43028000	Genic enhancers	Adipose Nuclei	Adipose

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