Variant report

Variant	rs1401478
Chromosome Location	chr3:95040903-95040904
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1012061	0.83[AMR][1000 genomes]
rs10933940	0.82[AMR][1000 genomes]
rs10933941	0.82[AMR][1000 genomes]
rs11924111	0.83[AMR][1000 genomes]
rs11928664	0.86[AMR][1000 genomes]
rs12630013	0.82[AMR][1000 genomes]
rs12639003	0.82[AMR][1000 genomes]
rs1476323	0.82[AMR][1000 genomes]
rs1519160	0.84[AMR][1000 genomes]
rs1607487	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17383687	0.82[AMR][1000 genomes]
rs17383861	0.82[AMR][1000 genomes]
rs17384029	0.83[AMR][1000 genomes]
rs17384064	0.83[AMR][1000 genomes]
rs17442941	0.82[AMR][1000 genomes]
rs1914063	0.81[AMR][1000 genomes]
rs1968016	0.82[AMR][1000 genomes]
rs2048861	0.82[AMR][1000 genomes]
rs2048863	0.81[AMR][1000 genomes]
rs2176276	0.83[AMR][1000 genomes]
rs2311285	0.83[AMR][1000 genomes]
rs478095	0.84[AMR][1000 genomes]
rs479964	0.84[AMR][1000 genomes]
rs4857157	0.82[AMR][1000 genomes]
rs4857159	0.81[AMR][1000 genomes]
rs509321	0.85[AMR][1000 genomes]
rs511189	0.85[AMR][1000 genomes]
rs533453	0.85[AMR][1000 genomes]
rs542297	0.90[AMR][1000 genomes]
rs56233996	0.82[AMR][1000 genomes]
rs575436	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58823483	0.83[AMR][1000 genomes]
rs60875944	0.83[AMR][1000 genomes]
rs61446477	0.82[AMR][1000 genomes]
rs6786697	0.86[AMR][1000 genomes]
rs72618498	0.82[AMR][1000 genomes]
rs72618499	0.82[AMR][1000 genomes]
rs72618500	0.82[AMR][1000 genomes]
rs72620004	0.83[AMR][1000 genomes]
rs72620005	0.83[AMR][1000 genomes]
rs72620006	0.83[AMR][1000 genomes]
rs72620007	0.83[AMR][1000 genomes]
rs7639829	0.82[AMR][1000 genomes]
rs9826288	0.86[AMR][1000 genomes]
rs9855077	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013680	chr3:94777881-95538336	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536653	chr3:94777881-95538336	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv877170	chr3:94790666-95564838	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv999347	chr3:94832290-95177750	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv877175	chr3:94869561-95210873	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1011235	chr3:94870789-95238299	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv428091	chr3:94942642-95393754	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv428744	chr3:94960533-95145238	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv834767	chr3:94972069-95148035	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:95039200-95046000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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