Variant report

Variant	rs575436
Chromosome Location	chr3:95038452-95038453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs1012061	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10511151	0.82[ASN][1000 genomes]
rs10933940	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10933941	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11918082	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11918166	0.81[AFR][1000 genomes]
rs11920130	0.87[ASN][1000 genomes]
rs11923716	0.81[AFR][1000 genomes]
rs11924111	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11928664	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12495920	0.86[AMR][1000 genomes]
rs12497708	0.99[ASN][1000 genomes]
rs12630013	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12630859	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12639003	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12695188	0.81[ASN][1000 genomes]
rs13064413	0.81[ASN][1000 genomes]
rs13065008	0.87[ASN][1000 genomes]
rs13065369	0.87[ASN][1000 genomes]
rs13070939	0.80[ASN][1000 genomes]
rs13071522	0.87[ASN][1000 genomes]
rs13076586	0.81[ASN][1000 genomes]
rs13078348	0.81[ASN][1000 genomes]
rs13081547	0.81[ASN][1000 genomes]
rs13097484	0.99[ASN][1000 genomes]
rs13098931	0.99[ASN][1000 genomes]
rs1356273	0.99[ASN][1000 genomes]
rs1400304	0.88[ASN][1000 genomes]
rs1401478	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1476323	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1516601	0.81[ASN][1000 genomes]
rs1516605	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1516606	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1516607	0.87[ASN][1000 genomes]
rs1516608	0.93[ASN][1000 genomes]
rs1516609	0.99[ASN][1000 genomes]
rs1519160	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1607487	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1607488	0.99[ASN][1000 genomes]
rs1607489	0.99[ASN][1000 genomes]
rs17383687	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17383861	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17384029	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17384064	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17442941	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1914063	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1914064	0.86[ASN][1000 genomes]
rs1968016	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2048861	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2048863	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2176276	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2310403	0.81[AFR][1000 genomes]
rs2310406	0.81[AFR][1000 genomes]
rs2311285	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2311287	0.83[ASN][1000 genomes]
rs3926894	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4610223	0.81[AFR][1000 genomes]
rs478095	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs479964	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4857157	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4857159	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4857160	0.95[ASN][1000 genomes]
rs490921	0.81[AMR][1000 genomes]
rs509321	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs511189	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs516597	0.87[ASN][1000 genomes]
rs533453	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs542297	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56233996	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57291530	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58823483	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59007421	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59469832	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60875944	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61446477	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62269419	0.81[ASN][1000 genomes]
rs6774134	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6786697	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6807708	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6810229	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72615791	0.81[AFR][1000 genomes]
rs72618497	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72618498	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72618499	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72618500	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72620004	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72620005	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72620006	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72620007	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7429603	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7619484	0.82[ASN][1000 genomes]
rs7627614	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7634250	0.81[ASN][1000 genomes]
rs7639829	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7653792	0.99[ASN][1000 genomes]
rs9813568	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9826288	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9838302	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9855077	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013680	chr3:94777881-95538336	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536653	chr3:94777881-95538336	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv877170	chr3:94790666-95564838	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv999347	chr3:94832290-95177750	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv877175	chr3:94869561-95210873	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1011235	chr3:94870789-95238299	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv428091	chr3:94942642-95393754	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv428744	chr3:94960533-95145238	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv834767	chr3:94972069-95148035	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:95035600-95038600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:95037800-95039200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:95038200-95039800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:95038400-95038600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr3:95038400-95038800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:95038400-95038800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:95038400-95039000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr3:95038400-95039000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:95038400-95039200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:95038400-95039200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:95038400-95039200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:95038400-95039400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr3:95038400-95039800	Enhancers	HUES64 Cell Line	embryonic stem cell

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