Variant report

Variant	rs140269121
Chromosome Location	chr14:71786267-71786268
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr14:71786032-71789994	SK-N-SH	brain:	n/a	chr14:71786940-71786955 chr14:71786938-71786953
2	RAD21	chr14:71786162-71790206	SK-N-SH	brain:	n/a	chr14:71789547-71789566 chr14:71787953-71787963 chr14:71787922-71787932 chr14:71787005-71787018 chr14:71787277-71787290 chr14:71787747-71787761
3	SIN3AK20	chr14:71786208-71789791	MCF-7	breast:	n/a	n/a
4	MXI1	chr14:71786207-71788476	IMR90	lung:	n/a	chr14:71786940-71786955 chr14:71786938-71786953

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71780085..71783168-chr14:71784973..71787067,3	K562	blood:
2	chr14:71776798..71778756-chr14:71785140..71789113,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MAP3K9-3	chr14:71786174-71786271	XLOC_011064
2	lnc-MAP3K9-3	chr14:71786174-71786271	XLOC_011064
3	lnc-MAP3K9-3	chr14:71786174-71786298	NONHSAT037628

Variant related genes	Relation type
SIPA1L1	TF binding region
ENSG00000259146	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832827	chr14:71676178-71833519	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv3405849	chr14:71786224-71789072	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71771800-71786400	Weak transcription	Pancreas	Pancrea
2	chr14:71779800-71786400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr14:71781800-71786400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:71781800-71786400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:71784400-71786400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:71784400-71786400	Weak transcription	Fetal Muscle Leg	muscle
7	chr14:71784600-71786400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr14:71784600-71786400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:71784600-71786400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:71784600-71786400	Weak transcription	Left Ventricle	heart
11	chr14:71784600-71786400	Weak transcription	Spleen	Spleen
12	chr14:71785000-71786400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr14:71786000-71786400	Enhancers	Dnd41	blood
14	chr14:71786000-71786600	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr14:71786000-71789200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr14:71786200-71786400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr14:71786200-71786400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:71786200-71786400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr14:71786200-71786400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
20	chr14:71786200-71786400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:71786200-71786400	Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr14:71786200-71786400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr14:71786200-71786400	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr14:71786200-71786400	Enhancers	Primary B cells from cord blood	blood
25	chr14:71786200-71786400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr14:71786200-71786400	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr14:71786200-71786400	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr14:71786200-71786400	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr14:71786200-71786400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr14:71786200-71786400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr14:71786200-71786400	Enhancers	Muscle Satellite Cultured Cells	--
32	chr14:71786200-71786400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr14:71786200-71786400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr14:71786200-71786400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr14:71786200-71786400	Enhancers	Adipose Nuclei	Adipose
36	chr14:71786200-71786400	Enhancers	Brain Anterior Caudate	brain
37	chr14:71786200-71786400	Enhancers	Brain Cingulate Gyrus	brain
38	chr14:71786200-71786400	Enhancers	Brain Germinal Matrix	brain
39	chr14:71786200-71786400	Enhancers	Brain Substantia Nigra	brain
40	chr14:71786200-71786400	Enhancers	Colon Smooth Muscle	Colon
41	chr14:71786200-71786400	Enhancers	Fetal Intestine Large	intestine
42	chr14:71786200-71786400	Enhancers	Fetal Intestine Small	intestine
43	chr14:71786200-71786400	Enhancers	Fetal Kidney	kidney
44	chr14:71786200-71786400	Enhancers	Psoas Muscle	Psoas
45	chr14:71786200-71786400	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr14:71786200-71786400	Active TSS	Skeletal Muscle Male	skeletal muscle
47	chr14:71786200-71786400	Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr14:71786200-71786400	Enhancers	Thymus	Thymus
49	chr14:71786200-71786400	Enhancers	HepG2	liver
50	chr14:71786200-71786400	Active TSS	HMEC	breast

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