Variant report

Variant	rs1402862
Chromosome Location	chr15:35093107-35093108
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35091621..35093914-chr15:35110145..35112659,2	K562	blood:
2	chr15:35091969..35094940-chr15:35115211..35117056,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11852345	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12164908	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1402861	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2083003	1.00[EUR][1000 genomes]
rs2339645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2339646	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2879530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4542617	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57268131	1.00[EUR][1000 genomes]
rs60517923	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60614165	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61041110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495716	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7165734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7166311	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7181795	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7182728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7183018	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74009721	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74009725	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv569133	chr15:34881304-35142566	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv457106	chr15:35049787-35227613	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv569153	chr15:35049787-35227613	Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35087600-35095000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:35088400-35094000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr15:35090200-35097000	Enhancers	Fetal Heart	heart
4	chr15:35091200-35093200	Enhancers	NHDF-Ad	bronchial
5	chr15:35091400-35093200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:35091400-35094400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:35091600-35093400	Enhancers	Left Ventricle	heart
8	chr15:35091800-35094000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:35091800-35095000	Enhancers	Fetal Muscle Leg	muscle
10	chr15:35091800-35096200	Weak transcription	Brain Hippocampus Middle	brain
11	chr15:35092000-35093400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:35092000-35094000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:35092000-35094400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr15:35092000-35095400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr15:35092000-35095600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:35092200-35093200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr15:35092200-35093400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr15:35092200-35093400	Enhancers	Hela-S3	cervix
19	chr15:35092200-35094400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:35092200-35095600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr15:35092400-35095200	Weak transcription	K562	blood
22	chr15:35092400-35097600	Enhancers	HSMMtube	muscle
23	chr15:35092800-35093200	Enhancers	Placenta Amnion	Placenta Amnion
24	chr15:35092800-35093400	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr15:35092800-35094600	Weak transcription	Fetal Lung	lung
26	chr15:35092800-35095600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr15:35093000-35093200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr15:35093000-35093200	Flanking Active TSS	HSMM	muscle
29	chr15:35093000-35095200	Weak transcription	Placenta	Placenta
30	chr15:35093000-35100200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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