Variant report

Variant	rs74009721
Chromosome Location	chr15:35095634-35095635
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35087884..35090381-chr15:35093368..35096000,2	K562	blood:

Variant related genes	Relation type
ENSG00000159251	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11852345	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12164908	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1402861	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1402862	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2083003	1.00[EUR][1000 genomes]
rs2339645	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2339646	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2879530	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4542617	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57268131	1.00[EUR][1000 genomes]
rs60517923	1.00[EUR][1000 genomes]
rs60614165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61041110	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495716	1.00[EUR][1000 genomes]
rs7165734	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7166311	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7181795	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7182728	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7183018	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74009725	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv569133	chr15:34881304-35142566	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv457106	chr15:35049787-35227613	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv569153	chr15:35049787-35227613	Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35090200-35097000	Enhancers	Fetal Heart	heart
2	chr15:35091800-35096200	Weak transcription	Brain Hippocampus Middle	brain
3	chr15:35092400-35097600	Enhancers	HSMMtube	muscle
4	chr15:35093000-35100200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr15:35093200-35097000	Weak transcription	NHDF-Ad	bronchial
6	chr15:35093200-35100200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:35093400-35096400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr15:35094200-35096000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr15:35094200-35097800	Enhancers	HSMM	muscle
10	chr15:35094400-35096600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:35094400-35097200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:35094400-35098600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:35095000-35096200	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr15:35095200-35095800	Enhancers	K562	blood
15	chr15:35095200-35096000	Enhancers	Placenta	Placenta
16	chr15:35095200-35096000	Enhancers	HMEC	breast
17	chr15:35095200-35096400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:35095200-35096400	Enhancers	Hela-S3	cervix
19	chr15:35095200-35097600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr15:35095400-35096000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr15:35095400-35096000	Enhancers	Fetal Muscle Leg	muscle
22	chr15:35095600-35095800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr15:35095600-35095800	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr15:35095600-35095800	Enhancers	Fetal Muscle Trunk	muscle
25	chr15:35095600-35096000	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr15:35095600-35096400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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