Variant report

Variant	rs1403892
Chromosome Location	chr2:168272722-168272723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10198766	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10803824	0.89[ASN][1000 genomes]
rs10803825	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10930268	0.83[ASN][1000 genomes]
rs10930270	0.86[ASN][1000 genomes]
rs10930271	1.00[EUR][1000 genomes]
rs1357600	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1357601	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1357605	0.88[ASN][1000 genomes]
rs1357606	0.88[ASN][1000 genomes]
rs1357607	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1403891	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1403893	1.00[EUR][1000 genomes]
rs1403895	0.83[ASN][1000 genomes]
rs1403896	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1403897	0.86[ASN][1000 genomes]
rs1403899	0.86[ASN][1000 genomes]
rs1403903	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1478384	0.86[ASN][1000 genomes]
rs1523881	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1523882	0.83[ASN][1000 genomes]
rs1523886	1.00[EUR][1000 genomes]
rs1523887	1.00[EUR][1000 genomes]
rs1523888	0.89[ASN][1000 genomes]
rs1523889	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1568747	0.86[ASN][1000 genomes]
rs1608519	0.86[ASN][1000 genomes]
rs1608520	0.86[ASN][1000 genomes]
rs1880171	1.00[EUR][1000 genomes]
rs1916744	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1916745	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1916748	0.86[ASN][1000 genomes]
rs1916749	0.86[ASN][1000 genomes]
rs1916750	0.86[ASN][1000 genomes]
rs1916751	0.86[ASN][1000 genomes]
rs2030655	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2030656	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2030657	0.83[ASN][1000 genomes]
rs2091100	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2140499	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2140500	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2177442	0.86[ASN][1000 genomes]
rs2204278	0.87[EUR][1000 genomes]
rs2222504	0.89[ASN][1000 genomes]
rs2263240	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2617365	0.83[ASN][1000 genomes]
rs2617379	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2617380	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2617381	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2617383	0.88[ASN][1000 genomes]
rs2617386	0.86[ASN][1000 genomes]
rs2617388	0.86[ASN][1000 genomes]
rs2617400	0.83[ASN][1000 genomes]
rs2689820	0.86[ASN][1000 genomes]
rs2689825	0.81[ASN][1000 genomes]
rs2689827	0.81[ASN][1000 genomes]
rs2689832	0.86[ASN][1000 genomes]
rs2689833	0.86[ASN][1000 genomes]
rs2689843	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2689844	0.81[AFR][1000 genomes]
rs2689845	1.00[EUR][1000 genomes]
rs2689846	1.00[EUR][1000 genomes]
rs2689847	1.00[EUR][1000 genomes]
rs2689848	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2689849	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2689850	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2689851	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2689853	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689854	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689855	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2927602	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2949010	0.86[ASN][1000 genomes]
rs4130760	1.00[EUR][1000 genomes]
rs4363998	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs59534092	1.00[EUR][1000 genomes]
rs6704984	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6725171	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6729570	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6747382	1.00[EUR][1000 genomes]
rs6756322	0.83[ASN][1000 genomes]
rs6756997	0.82[AFR][1000 genomes]
rs6759323	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6759384	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73972270	0.86[EUR][1000 genomes]
rs73972274	1.00[EUR][1000 genomes]
rs998015	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv431790	chr2:168217873-168273530	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2760556	chr2:168259049-168283244	Enhancers Genic enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168263600-168278200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:168266000-168277400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr2:168271200-168273200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr2:168272400-168273200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr2:168272400-168273200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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