Variant report

Variant	rs6759384
Chromosome Location	chr2:168283513-168283514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:168276375..168278559-chr2:168283313..168285075,2	MCF-7	breast:
2	chr14:75841123..75843118-chr2:168281700..168283742,2	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10198766	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10803824	0.83[ASN][1000 genomes]
rs10803825	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10930271	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1357600	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1357601	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1357605	0.81[ASN][1000 genomes]
rs1357606	0.81[ASN][1000 genomes]
rs1357607	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1403891	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1403892	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1403893	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1403895	0.89[ASN][1000 genomes]
rs1403896	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1403903	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1523881	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1523886	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1523887	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1523888	0.83[ASN][1000 genomes]
rs1523889	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1880171	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1916744	1.00[EUR][1000 genomes]
rs1916745	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2030655	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030656	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030657	0.89[ASN][1000 genomes]
rs2091100	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2140498	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2140499	0.89[ASN][1000 genomes]
rs2140500	1.00[EUR][1000 genomes]
rs2204278	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2222504	0.83[ASN][1000 genomes]
rs2263240	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2617379	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2617380	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2617381	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2617383	0.81[ASN][1000 genomes]
rs2689838	0.83[AMR][1000 genomes]
rs2689843	1.00[EUR][1000 genomes]
rs2689845	1.00[EUR][1000 genomes]
rs2689846	1.00[EUR][1000 genomes]
rs2689847	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2689848	1.00[EUR][1000 genomes]
rs2689849	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2689850	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2689851	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2689853	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2689854	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2689855	1.00[EUR][1000 genomes]
rs2927602	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4130760	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4363998	0.87[EUR][1000 genomes]
rs59534092	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62194917	0.83[AMR][1000 genomes]
rs6704984	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6725171	1.00[EUR][1000 genomes]
rs6729570	1.00[EUR][1000 genomes]
rs6747382	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6756322	0.89[ASN][1000 genomes]
rs6759323	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73972270	0.86[EUR][1000 genomes]
rs73972274	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs998015	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168278000-168292400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:168279000-168284200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr2:168279400-168284400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr2:168279400-168284400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:168280800-168287200	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:168283000-168283800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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