Variant report

Variant	rs1404739
Chromosome Location	chr7:147438039-147438040
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1101042	0.83[AFR][1000 genomes]
rs1404740	1.00[AFR][1000 genomes]
rs1880572	1.00[AFR][1000 genomes]
rs2538980	0.83[AFR][1000 genomes]
rs2708254	0.83[AFR][1000 genomes]
rs6976194	1.00[AFR][1000 genomes]
rs851664	0.83[AFR][1000 genomes]
rs851665	0.83[AFR][1000 genomes]
rs851671	0.83[AFR][1000 genomes]
rs851675	0.83[AFR][1000 genomes]
rs851677	0.83[AFR][1000 genomes]
rs851680	0.83[AFR][1000 genomes]
rs851682	0.83[AFR][1000 genomes]
rs851687	0.83[AFR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1404739	ISX	trans	lymphoblastoid	seeQTL
rs1404739	C6orf105	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147437800-147439200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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