Variant report

Variant	rs6976194
Chromosome Location	chr7:147452179-147452180
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10274907	1.00[YRI][hapmap]
rs1101042	0.83[AFR][1000 genomes]
rs1404739	1.00[AFR][1000 genomes]
rs1404740	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1608794	1.00[YRI][hapmap]
rs1880572	1.00[AFR][1000 genomes]
rs2538980	0.83[AFR][1000 genomes]
rs2708254	0.83[AFR][1000 genomes]
rs2708260	0.83[AFR][1000 genomes]
rs6967132	1.00[YRI][hapmap]
rs851664	0.83[AFR][1000 genomes]
rs851665	0.83[AFR][1000 genomes]
rs851671	0.83[AFR][1000 genomes]
rs851675	0.83[AFR][1000 genomes]
rs851677	0.83[AFR][1000 genomes]
rs851680	0.83[AFR][1000 genomes]
rs851682	0.83[AFR][1000 genomes]
rs851687	0.83[AFR][1000 genomes]
rs940723	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147451000-147452800	Weak transcription	Brain Hippocampus Middle	brain
2	chr7:147451800-147453600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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