Variant report

Variant	rs140602855
Chromosome Location	chr8:100026407-100026408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3AK20	chr8:100024398-100026456	MCF-7	breast:	n/a	n/a
2	RCOR1	chr8:100024586-100027052	K562	blood:	n/a	n/a
3	ZNF384	chr8:100025063-100027080	K562	blood:	n/a	n/a
4	ZNF384	chr8:100026076-100026476	GM12878	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:99952762..99963438-chr8:100019139..100031293,37	MCF-7	breast:
2	chr8:99953586..99962238-chr8:100023509..100028680,26	MCF-7	breast:
3	chr8:100013186..100018258-chr8:100022769..100026424,8	MCF-7	breast:
4	chr8:100025901..100029663-chr8:100033487..100035486,3	K562	blood:
5	chr8:100011149..100013712-chr8:100025594..100027308,2	K562	blood:
6	chr8:100024284..100027084-chr8:100113982..100120280,5	MCF-7	breast:
7	chr8:100025833..100028756-chr8:100100624..100103335,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000253948	TF binding region
ENSG00000263842	Chromatin interaction
ENSG00000164920	Chromatin interaction
ENSG00000104375	Chromatin interaction
ENSG00000271930	Chromatin interaction
ENSG00000253180	Chromatin interaction
ENSG00000132549	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027025	chr8:99672977-100115315	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv539690	chr8:99672977-100115315	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1031089	chr8:99715785-100399935	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv1023227	chr8:99902615-100290948	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv539692	chr8:99902615-100290948	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	esv1803951	chr8:99922754-100191783	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv611809	chr8:99925628-100093510	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv531505	chr8:99932947-100464147	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	nsv1020174	chr8:99978271-100168938	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	nsv539693	chr8:99978271-100168938	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	nsv891221	chr8:100016505-100156391	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	esv3384926	chr8:100026040-100027833	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:100023200-100027200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:100023200-100027200	Active TSS	K562	blood
3	chr8:100023600-100027000	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr8:100024000-100026800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:100024000-100026800	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr8:100024000-100027200	Active TSS	NHLF	lung
7	chr8:100024200-100026600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr8:100024200-100026600	Active TSS	NH-A	brain
9	chr8:100024200-100026800	Active TSS	Muscle Satellite Cultured Cells	--
10	chr8:100024200-100027000	Active TSS	HSMMtube	muscle
11	chr8:100024400-100026800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:100024400-100026800	Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr8:100024400-100027000	Active TSS	Ovary	ovary
14	chr8:100024400-100027200	Active TSS	NHDF-Ad	bronchial
15	chr8:100024600-100026600	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr8:100024600-100026600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:100024600-100026600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:100024600-100026600	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr8:100024600-100026600	Active TSS	Fetal Stomach	stomach
20	chr8:100024600-100026600	Active TSS	Right Atrium	heart
21	chr8:100024600-100026600	Active TSS	A549	lung
22	chr8:100024600-100026600	Active TSS	Osteobl	bone
23	chr8:100024600-100026800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr8:100024600-100026800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr8:100024600-100026800	Active TSS	Brain Angular Gyrus	brain
26	chr8:100024600-100026800	Active TSS	Colon Smooth Muscle	Colon
27	chr8:100024600-100026800	Active TSS	Fetal Kidney	kidney
28	chr8:100024600-100026800	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr8:100024600-100026800	Active TSS	GM12878-XiMat	blood
30	chr8:100024600-100026800	Active TSS	HMEC	breast
31	chr8:100024600-100026800	Active TSS	HSMM	muscle
32	chr8:100024600-100027000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr8:100024600-100027000	Active TSS	Fetal Muscle Leg	muscle
34	chr8:100024600-100027200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr8:100024600-100027200	Active TSS	Rectal Smooth Muscle	rectum
36	chr8:100024800-100026600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr8:100024800-100026600	Active TSS	Hela-S3	cervix
38	chr8:100024800-100026800	Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr8:100024800-100027000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr8:100025000-100026600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr8:100025000-100026600	Active TSS	Primary T helper naive cells from peripheral blood	blood
42	chr8:100025000-100026800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr8:100025000-100026800	Active TSS	Rectal Mucosa Donor 29	rectum
44	chr8:100025000-100027200	Active TSS	Fetal Brain Female	brain
45	chr8:100025600-100027000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr8:100025800-100026800	Active TSS	Brain Germinal Matrix	brain
47	chr8:100026000-100026600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
48	chr8:100026000-100026600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr8:100026000-100027000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr8:100026000-100027000	Flanking Active TSS	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links