Variant report

Variant	rs1406889
Chromosome Location	chr6:161074440-161074441
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10945682	0.99[ASN][1000 genomes]
rs10945683	0.99[ASN][1000 genomes]
rs12175867	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13192132	0.92[ASN][1000 genomes]
rs13202636	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1321196	0.90[ASN][1000 genomes]
rs1569933	0.99[ASN][1000 genomes]
rs1740428	0.90[ASN][1000 genomes]
rs1950563	0.90[ASN][1000 genomes]
rs1950564	0.90[ASN][1000 genomes]
rs2092931	0.90[ASN][1000 genomes]
rs2144726	0.90[ASN][1000 genomes]
rs2983236	0.99[ASN][1000 genomes]
rs34600300	0.84[ASN][1000 genomes]
rs34620808	0.84[ASN][1000 genomes]
rs35600881	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3798221	0.82[ASN][1000 genomes]
rs3902910	0.84[ASN][1000 genomes]
rs4073498	0.84[ASN][1000 genomes]
rs41272044	0.84[ASN][1000 genomes]
rs62441908	0.82[ASN][1000 genomes]
rs62441936	0.84[ASN][1000 genomes]
rs62442784	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6455689	0.84[ASN][1000 genomes]
rs6455691	0.92[ASN][1000 genomes]
rs6455692	0.92[ASN][1000 genomes]
rs6455695	0.94[ASN][1000 genomes]
rs6455696	0.96[ASN][1000 genomes]
rs6902102	0.92[ASN][1000 genomes]
rs6903340	0.83[ASN][1000 genomes]
rs6905073	0.92[ASN][1000 genomes]
rs6905422	0.97[ASN][1000 genomes]
rs6906446	0.97[ASN][1000 genomes]
rs6910635	0.82[ASN][1000 genomes]
rs6913833	0.92[ASN][1000 genomes]
rs6919497	0.96[ASN][1000 genomes]
rs6921516	0.82[ASN][1000 genomes]
rs6923917	0.96[ASN][1000 genomes]
rs6926458	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6926896	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6927129	0.84[ASN][1000 genomes]
rs6929299	0.96[ASN][1000 genomes]
rs6930342	0.92[ASN][1000 genomes]
rs6932014	0.92[ASN][1000 genomes]
rs6933576	0.97[ASN][1000 genomes]
rs6937879	0.94[ASN][1000 genomes]
rs6939089	0.82[ASN][1000 genomes]
rs6940254	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7450279	0.84[ASN][1000 genomes]
rs7450411	0.84[ASN][1000 genomes]
rs7453899	0.84[ASN][1000 genomes]
rs7752408	0.92[ASN][1000 genomes]
rs7760585	0.99[ASN][1000 genomes]
rs7761377	0.94[ASN][1000 genomes]
rs7765781	0.84[ASN][1000 genomes]
rs7765803	0.84[ASN][1000 genomes]
rs7769720	0.90[ASN][1000 genomes]
rs7770685	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771129	0.92[ASN][1000 genomes]
rs7771801	0.84[ASN][1000 genomes]
rs7775704	0.82[ASN][1000 genomes]
rs9295130	0.99[ASN][1000 genomes]
rs9346824	0.82[ASN][1000 genomes]
rs9355295	0.82[ASN][1000 genomes]
rs9355297	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9355813	0.96[ASN][1000 genomes]
rs9355814	0.96[ASN][1000 genomes]
rs9355815	0.96[ASN][1000 genomes]
rs9364564	0.82[ASN][1000 genomes]
rs9365176	0.82[ASN][1000 genomes]
rs9365178	0.84[ASN][1000 genomes]
rs9365179	0.92[ASN][1000 genomes]
rs9456551	0.84[ASN][1000 genomes]
rs9456552	0.92[ASN][1000 genomes]
rs9457946	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1030171	chr6:160648469-161091864	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	esv1801254	chr6:160932981-161079798	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1846296	chr6:160932981-161079798	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv427770	chr6:160932981-161079798	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv1793293	chr6:160937316-161079798	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv1806032	chr6:160937316-161079798	Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv1818315	chr6:160937316-161079798	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv1826647	chr6:160937316-161079798	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv1843091	chr6:160937316-161079798	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv428155	chr6:160937316-161079798	Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv604997	chr6:160957114-161088918	Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv886814	chr6:160970963-161081331	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	nsv5567	chr6:160996906-161084659	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	nsv981203	chr6:161020016-161083157	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
17	nsv7986	chr6:161027054-161081671	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
18	esv1814665	chr6:161027972-161080991	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
19	esv1792224	chr6:161027972-161083687	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	esv1810465	chr6:161028622-161081191	Strong transcription Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	esv1806392	chr6:161028822-161080991	ZNF genes & repeats Active TSS Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	esv1830666	chr6:161028822-161080991	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
23	esv1823121	chr6:161030133-161080991	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
24	nsv605005	chr6:161069941-161152449	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161071600-161077000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:161073400-161074800	Enhancers	Liver	Liver

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