Variant report

Variant	rs1407466
Chromosome Location	chr9:7968548-7968549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1322473	0.94[EUR][1000 genomes]
rs1322475	0.82[EUR][1000 genomes]
rs1407470	0.87[EUR][1000 genomes]
rs1535483	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1535484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1570324	0.94[EUR][1000 genomes]
rs7026049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7865817	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9299058	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033077	chr9:7358832-7990735	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv539977	chr9:7358832-7990735	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv995116	chr9:7682729-8065192	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1024456	chr9:7887727-8157591	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv539979	chr9:7887727-8157591	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv892216	chr9:7910934-7985651	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv892217	chr9:7919153-7978514	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7962800-7969800	Weak transcription	Fetal Brain Male	brain
2	chr9:7964600-7977200	Weak transcription	Fetal Heart	heart
3	chr9:7966800-7969000	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr9:7967600-7968600	Enhancers	Fetal Intestine Large	intestine
5	chr9:7967600-7968800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr9:7967600-7968800	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr9:7967800-7972800	Weak transcription	Primary T cells from cord blood	blood
8	chr9:7967800-7973400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr9:7968000-7969200	Enhancers	Fetal Stomach	stomach
10	chr9:7968000-7972400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr9:7968000-7973000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr9:7968000-7973200	Weak transcription	Thymus	Thymus
13	chr9:7968000-7974000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr9:7968200-7968800	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr9:7968200-7969000	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr9:7968200-7969200	Weak transcription	Small Intestine	intestine
17	chr9:7968200-7972400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr9:7968200-7972400	Weak transcription	Dnd41	blood
19	chr9:7968200-7972600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr9:7968200-7972600	Weak transcription	Fetal Thymus	thymus
21	chr9:7968200-7973200	Weak transcription	Primary B cells from cord blood	blood
22	chr9:7968200-7973200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr9:7968200-7973200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr9:7968200-7973400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr9:7968200-7973400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr9:7968200-7976800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr9:7968400-7969600	Enhancers	Fetal Lung	lung

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