Variant report

Variant	rs7865817
Chromosome Location	chr9:7976209-7976210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10815735	0.95[ASN][1000 genomes]
rs1322473	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1322475	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1407466	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1407470	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1535483	0.95[EUR][1000 genomes]
rs1535484	0.95[EUR][1000 genomes]
rs1570324	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7026049	0.95[EUR][1000 genomes]
rs9299058	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033077	chr9:7358832-7990735	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv539977	chr9:7358832-7990735	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv995116	chr9:7682729-8065192	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1024456	chr9:7887727-8157591	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv539979	chr9:7887727-8157591	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv892216	chr9:7910934-7985651	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv892217	chr9:7919153-7978514	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7964600-7977200	Weak transcription	Fetal Heart	heart
2	chr9:7968200-7976800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr9:7968800-7977000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr9:7969000-7976600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr9:7972600-7979800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr9:7972600-7982000	Enhancers	Fetal Thymus	thymus
7	chr9:7973000-7979000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr9:7973200-7976600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr9:7973200-7978200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr9:7973200-7979200	Enhancers	Primary B cells from peripheral blood	blood
11	chr9:7973400-7977000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr9:7973400-7979000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr9:7973400-7979000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr9:7973800-7978600	Enhancers	Primary hematopoietic stem cells	blood
15	chr9:7973800-7978800	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr9:7973800-7978800	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr9:7973800-7979000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr9:7974000-7978800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr9:7974000-7979200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr9:7974600-7977000	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr9:7974800-7977200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr9:7974800-7977200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:7974800-7978600	Enhancers	Primary B cells from cord blood	blood
24	chr9:7974800-7979600	Weak transcription	Fetal Lung	lung
25	chr9:7975000-7979600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:7975200-7976800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr9:7975200-7978800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr9:7975800-7976600	Enhancers	Placenta Amnion	Placenta Amnion
29	chr9:7975800-7979200	Enhancers	Dnd41	blood
30	chr9:7976000-7978000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr9:7976200-7976400	Flanking Active TSS	Primary T cells from cord blood	blood
32	chr9:7976200-7976400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
33	chr9:7976200-7976600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
34	chr9:7976200-7977000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
35	chr9:7976200-7977000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr9:7976200-7977000	Flanking Active TSS	Thymus	Thymus
37	chr9:7976200-7977200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
38	chr9:7976200-7977600	Flanking Active TSS	GM12878-XiMat	blood
39	chr9:7976200-7978000	Enhancers	Spleen	Spleen

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