Variant report

Variant	rs1409479
Chromosome Location	chr13:48084197-48084198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:48082466..48084126-chr13:48084171..48087051,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1409483	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1571063	0.92[AFR][1000 genomes]
rs4130147	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4131976	0.82[EUR][1000 genomes]
rs4257112	0.83[EUR][1000 genomes]
rs4284535	0.83[EUR][1000 genomes]
rs4303377	0.83[EUR][1000 genomes]
rs4383047	0.83[EUR][1000 genomes]
rs4470048	0.83[EUR][1000 genomes]
rs4622408	0.81[EUR][1000 genomes]
rs4941592	0.83[EUR][1000 genomes]
rs4942642	0.83[EUR][1000 genomes]
rs61951795	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7984261	0.83[EUR][1000 genomes]
rs9526339	0.83[EUR][1000 genomes]
rs9526340	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9526341	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9526342	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9534658	0.81[EUR][1000 genomes]
rs9534659	0.81[EUR][1000 genomes]
rs9534662	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9534663	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9534664	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9534665	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9534666	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9567872	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv3450125	chr13:47919050-48236684	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv455879	chr13:47919611-48190106	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv561588	chr13:47943829-48190106	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1043543	chr13:48079517-48104782	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1041047	chr13:48081565-48104782	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1039986	chr13:48081565-48119960	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1043240	chr13:48082916-48119960	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48083400-48085000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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