Variant report

Variant	rs9567872
Chromosome Location	chr13:48057273-48057274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11617662	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11618099	0.80[EUR][1000 genomes]
rs1409479	0.83[EUR][1000 genomes]
rs1409483	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1571063	0.82[EUR][1000 genomes]
rs17070149	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2406331	0.80[EUR][1000 genomes]
rs4130147	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4131976	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4257112	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4284535	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4303377	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4383047	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4470048	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4622408	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4627222	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4941592	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4942642	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61951795	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7140005	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7322715	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7322882	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7338544	0.84[EUR][1000 genomes]
rs7984261	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7984310	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7988780	0.82[ASN][1000 genomes]
rs9526339	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9526340	1.00[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9526341	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9526342	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9534658	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9534659	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9534661	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9534662	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9534663	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9534664	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9534665	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9534666	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9567854	0.80[EUR][1000 genomes]
rs9567865	0.81[EUR][1000 genomes]
rs9591064	0.82[ASN][1000 genomes]
rs9595722	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9595723	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9595724	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv3450125	chr13:47919050-48236684	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv455879	chr13:47919611-48190106	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv561588	chr13:47943829-48190106	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48054200-48058600	Weak transcription	HSMM	muscle
2	chr13:48054400-48058600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:48054400-48058600	Weak transcription	NH-A	brain
4	chr13:48054400-48058600	Weak transcription	NHDF-Ad	bronchial
5	chr13:48054400-48058600	Weak transcription	Osteobl	bone
6	chr13:48054600-48058200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr13:48054600-48058200	Weak transcription	NHLF	lung
8	chr13:48054600-48058600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr13:48054800-48058200	Weak transcription	NHEK	skin
10	chr13:48055400-48057600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr13:48055600-48057800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr13:48055800-48057800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr13:48055800-48058000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr13:48056000-48057800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr13:48056000-48058200	Weak transcription	HMEC	breast
16	chr13:48056000-48058800	Weak transcription	HSMMtube	muscle
17	chr13:48056200-48057600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr13:48056200-48058200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr13:48056600-48058400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr13:48056600-48064200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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