Variant report

Variant	rs1409883
Chromosome Location	chr9:84649531-84649532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs59212517	1.00[EUR][1000 genomes]
rs73476171	1.00[EUR][1000 genomes]
rs73476179	1.00[EUR][1000 genomes]
rs73476189	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831639	chr9:84501548-84651151	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84636800-84649800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:84647000-84652200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:84647200-84650200	Weak transcription	Colon Smooth Muscle	Colon
4	chr9:84647200-84656200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:84647800-84649600	Weak transcription	Fetal Brain Female	brain
6	chr9:84648000-84650000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:84648200-84650200	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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