Variant report

Variant	rs1410759
Chromosome Location	chr13:97953439-97953440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97944192..97946659-chr13:97951933..97954715,2	MCF-7	breast:
2	chr13:97946659..97950744-chr13:97950983..97954750,4	MCF-7	breast:
3	chr13:97940763..97942613-chr13:97953141..97954942,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12428911	0.88[ASN][1000 genomes]
rs1974086	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4771991	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6491347	0.86[CHB][hapmap]
rs7999940	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs877671	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs9516886	0.86[CHB][hapmap]
rs9516887	0.86[CHB][hapmap]
rs9516888	0.86[CHB][hapmap]
rs9556695	0.87[CHB][hapmap]
rs9556696	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045777	chr13:97875574-97955134	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97914200-97960200	Weak transcription	Fetal Brain Male	brain
2	chr13:97925800-97987200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr13:97929400-97955000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr13:97931000-97953600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr13:97933000-97953600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr13:97933200-97970400	Weak transcription	Placenta	Placenta
7	chr13:97933600-97953600	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr13:97934000-97954400	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr13:97935600-97954800	Weak transcription	Colonic Mucosa	Colon
10	chr13:97942800-97995200	Weak transcription	Thymus	Thymus
11	chr13:97943400-97953600	Weak transcription	Esophagus	oesophagus
12	chr13:97943400-97957800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr13:97946400-97956400	Enhancers	Brain Cingulate Gyrus	brain
14	chr13:97946600-97956400	Enhancers	Brain Anterior Caudate	brain
15	chr13:97947400-97954400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr13:97947800-97953600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr13:97948000-97954400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr13:97948000-97958600	Weak transcription	Fetal Stomach	stomach
19	chr13:97948200-97958200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr13:97948600-97956400	Enhancers	Brain Angular Gyrus	brain
21	chr13:97948600-97958400	Weak transcription	HSMMtube	muscle
22	chr13:97948600-97971600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr13:97948800-97954200	Weak transcription	Fetal Heart	heart
24	chr13:97949200-97953600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr13:97949400-97953800	Weak transcription	Hela-S3	cervix
26	chr13:97949800-97953800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr13:97949800-97954000	Weak transcription	Primary T cells from cord blood	blood
28	chr13:97949800-97955800	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr13:97950000-97958400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr13:97950000-97958400	Weak transcription	Fetal Intestine Small	intestine
31	chr13:97950000-97971200	Weak transcription	Stomach Mucosa	stomach
32	chr13:97950200-97953600	Weak transcription	Fetal Muscle Leg	muscle
33	chr13:97950200-97961000	Weak transcription	K562	blood
34	chr13:97950200-97965200	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr13:97950800-97965200	Weak transcription	Primary hematopoietic stem cells	blood
36	chr13:97951200-97953600	Weak transcription	Lung	lung
37	chr13:97951200-97958400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr13:97951200-97958400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr13:97951200-97958600	Weak transcription	HSMM	muscle
40	chr13:97951200-97962600	Enhancers	Brain Hippocampus Middle	brain
41	chr13:97951400-97953600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr13:97951400-97953800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr13:97951400-97954200	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr13:97951400-97954800	Enhancers	Colon Smooth Muscle	Colon
45	chr13:97951400-97955400	Weak transcription	Small Intestine	intestine
46	chr13:97951400-97956400	Enhancers	Brain Substantia Nigra	brain
47	chr13:97951400-97958400	Weak transcription	Fetal Kidney	kidney
48	chr13:97951400-97958800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr13:97951400-97960000	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr13:97951600-97953800	Weak transcription	HMEC	breast

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