Variant report

Variant	rs877671
Chromosome Location	chr13:97961005-97961006
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97954626..97957097-chr13:97959109..97962404,3	K562	blood:
2	chr13:97957571..97959478-chr13:97960414..97962646,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1410759	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs1974085	0.81[CEU][hapmap]
rs1974086	0.84[CEU][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes]
rs3825422	0.80[MEX][hapmap]
rs4441122	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97925800-97987200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr13:97933200-97970400	Weak transcription	Placenta	Placenta
3	chr13:97942800-97995200	Weak transcription	Thymus	Thymus
4	chr13:97948600-97971600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr13:97950000-97971200	Weak transcription	Stomach Mucosa	stomach
6	chr13:97950200-97965200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr13:97950800-97965200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr13:97951200-97962600	Enhancers	Brain Hippocampus Middle	brain
9	chr13:97954400-97986200	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr13:97955000-97964000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr13:97955000-97987000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr13:97955200-97965600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr13:97955200-97968200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr13:97955200-97970400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr13:97955200-97986800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr13:97955400-97971400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr13:97955800-97965800	Weak transcription	Lung	lung
18	chr13:97956400-97961600	Enhancers	Liver	Liver
19	chr13:97957600-97962400	Enhancers	Brain Angular Gyrus	brain
20	chr13:97957800-97961400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr13:97957800-97961800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr13:97957800-97962400	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr13:97958000-97962000	Enhancers	HUVEC	blood vessel
24	chr13:97958000-97962200	Enhancers	NHLF	lung
25	chr13:97958200-97961200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr13:97958200-97961400	Enhancers	Fetal Heart	heart
27	chr13:97958200-97961800	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr13:97958200-97962000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr13:97958200-97962000	Enhancers	Fetal Muscle Leg	muscle
30	chr13:97958200-97962400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr13:97958200-97962400	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr13:97958400-97961600	Enhancers	Muscle Satellite Cultured Cells	--
33	chr13:97958400-97961600	Enhancers	Adipose Nuclei	Adipose
34	chr13:97958400-97961600	Enhancers	Colon Smooth Muscle	Colon
35	chr13:97958400-97962600	Enhancers	Brain Substantia Nigra	brain
36	chr13:97958600-97961400	Enhancers	Fetal Stomach	stomach
37	chr13:97958600-97961600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr13:97959000-97961400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr13:97959000-97961400	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr13:97959000-97967800	Weak transcription	Esophagus	oesophagus
41	chr13:97959000-97970400	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr13:97959000-97971200	Weak transcription	Duodenum Mucosa	Duodenum
43	chr13:97959200-97961600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr13:97959200-97961800	Enhancers	Hela-S3	cervix
45	chr13:97959200-97968000	Weak transcription	Fetal Intestine Small	intestine
46	chr13:97959200-97970400	Weak transcription	Small Intestine	intestine
47	chr13:97959400-97988800	Weak transcription	Fetal Intestine Large	intestine
48	chr13:97959800-97961800	Enhancers	Psoas Muscle	Psoas
49	chr13:97959800-97962000	Enhancers	Ovary	ovary
50	chr13:97959800-97962600	Strong transcription	Primary B cells from cord blood	blood

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