Variant report

Variant	rs1411488
Chromosome Location	chr13:76703483-76703484
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10507846	0.80[ASN][1000 genomes]
rs1381482	0.80[ASN][1000 genomes]
rs1576534	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2169441	0.80[ASN][1000 genomes]
rs2810426	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6562931	0.80[ASN][1000 genomes]
rs7342475	0.80[ASN][1000 genomes]
rs9530507	0.80[ASN][1000 genomes]
rs9530508	0.80[ASN][1000 genomes]
rs9530521	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9544119	1.00[JPT][hapmap]
rs9544121	1.00[JPT][hapmap]
rs9544127	0.80[ASN][1000 genomes]
rs9544129	0.80[ASN][1000 genomes]
rs9544133	0.80[ASN][1000 genomes]
rs9544163	0.90[ASN][1000 genomes]
rs9544169	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv900580	chr13:76665408-76735400	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76703200-76704000	Enhancers	Fetal Heart	heart
2	chr13:76703200-76704000	Enhancers	HSMMtube	muscle
3	chr13:76703400-76704000	Enhancers	Fetal Lung	lung
4	chr13:76703400-76704000	Enhancers	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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