Variant report

Variant	rs1412724
Chromosome Location	chr9:14961738-14961739
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10114147	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10810297	0.88[EUR][1000 genomes]
rs10810298	0.88[EUR][1000 genomes]
rs10810307	0.80[EUR][1000 genomes]
rs10810308	0.81[EUR][1000 genomes]
rs10961811	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10961817	0.81[EUR][1000 genomes]
rs10961819	0.84[CEU][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs11515203	0.91[ASN][1000 genomes]
rs11793253	0.88[EUR][1000 genomes]
rs12340301	0.81[EUR][1000 genomes]
rs12379705	0.87[EUR][1000 genomes]
rs1357474	0.88[EUR][1000 genomes]
rs1412720	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1464607	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1464608	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1589666	0.88[EUR][1000 genomes]
rs1829850	0.88[EUR][1000 genomes]
rs1855140	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1880012	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2049291	0.85[EUR][1000 genomes]
rs2140322	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2140326	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2381972	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2381973	0.88[EUR][1000 genomes]
rs4008009	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4382569	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4535838	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4548277	0.86[EUR][1000 genomes]
rs4553007	0.81[CEU][hapmap]
rs6415721	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6474873	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6474876	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6474878	0.81[EUR][1000 genomes]
rs7018678	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7020107	0.81[EUR][1000 genomes]
rs7026072	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7027560	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7028104	0.81[CEU][hapmap]
rs7028135	0.88[EUR][1000 genomes]
rs7028702	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7030516	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7030620	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7037967	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7040712	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7042782	0.88[EUR][1000 genomes]
rs7044666	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7046824	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7048248	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7048509	0.81[CEU][hapmap]
rs7350286	0.86[EUR][1000 genomes]
rs7350287	0.87[EUR][1000 genomes]
rs7848522	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7848747	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7855093	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7857763	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7865132	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9298710	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9969815	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv613647	chr9:14852141-15016475	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv892620	chr9:14922877-15086021	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv892621	chr9:14928013-15043692	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2761503	chr9:14960217-15049343	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv892622	chr9:14960217-15055607	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1412724	C9orf150	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14957600-14982400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:14958000-14962200	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:14959400-14961800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:14960800-14961800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:14960800-14962600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr9:14961000-14962600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:14961200-14962400	Enhancers	NHDF-Ad	bronchial
8	chr9:14961200-14962600	Active TSS	Duodenum Mucosa	Duodenum
9	chr9:14961200-14962600	Active TSS	K562	blood
10	chr9:14961400-14961800	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr9:14961400-14961800	Enhancers	Placenta	Placenta
12	chr9:14961400-14961800	Enhancers	Pancreas	Pancrea
13	chr9:14961400-14961800	Bivalent/Poised TSS	HepG2	liver
14	chr9:14961600-14961800	Enhancers	Left Ventricle	heart
15	chr9:14961600-14962000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr9:14961600-14962000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:14961600-14962200	Enhancers	Dnd41	blood
18	chr9:14961600-14963000	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links