Variant report

Variant	rs9969815
Chromosome Location	chr9:14949190-14949191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10114147	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10810297	0.87[EUR][1000 genomes]
rs10810298	0.87[EUR][1000 genomes]
rs10810308	0.81[EUR][1000 genomes]
rs10961811	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10961817	0.81[EUR][1000 genomes]
rs10961819	0.84[CEU][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs11515203	0.90[ASN][1000 genomes]
rs11793253	0.87[EUR][1000 genomes]
rs12340301	0.80[EUR][1000 genomes]
rs12379705	0.86[EUR][1000 genomes]
rs1357474	0.87[EUR][1000 genomes]
rs1412720	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1412724	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1464607	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1464608	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1589666	0.87[EUR][1000 genomes]
rs1829850	0.87[EUR][1000 genomes]
rs1855140	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1880012	0.86[EUR][1000 genomes]
rs2049291	0.84[EUR][1000 genomes]
rs2140322	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2140326	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2381972	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2381973	0.87[EUR][1000 genomes]
rs4008009	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4382569	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4535838	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4548277	0.86[EUR][1000 genomes]
rs4553007	0.81[CEU][hapmap]
rs6415721	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6474873	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6474876	0.87[EUR][1000 genomes]
rs6474878	0.80[EUR][1000 genomes]
rs7018678	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7020107	0.80[EUR][1000 genomes]
rs7026072	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7027560	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7028104	0.81[CEU][hapmap]
rs7028135	0.87[EUR][1000 genomes]
rs7028702	0.81[EUR][1000 genomes]
rs7030516	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7030620	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7037967	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7040712	0.86[EUR][1000 genomes]
rs7042782	0.87[EUR][1000 genomes]
rs7044666	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7046824	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7048248	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7048509	0.81[CEU][hapmap]
rs7350286	0.86[EUR][1000 genomes]
rs7350287	0.86[EUR][1000 genomes]
rs7848522	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7848747	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7855093	0.88[EUR][1000 genomes]
rs7857763	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7865132	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9298710	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv831518	chr9:14760638-14953501	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv613647	chr9:14852141-15016475	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892620	chr9:14922877-15086021	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv892621	chr9:14928013-15043692	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9969815	C9orf150	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14933200-14957200	Weak transcription	Fetal Muscle Leg	muscle
2	chr9:14942000-14950200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:14942400-14949400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr9:14942800-14949600	Weak transcription	Fetal Stomach	stomach
5	chr9:14945800-14949400	Weak transcription	Placenta	Placenta
6	chr9:14947600-14951600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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