Variant report

Variant	rs1412745
Chromosome Location	chr6:12875888-12875889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12527517	1.00[AMR][1000 genomes]
rs1332843	0.86[ASW][hapmap];0.84[YRI][hapmap];0.80[AFR][1000 genomes]
rs2184028	0.85[LWK][hapmap];1.00[AMR][1000 genomes]
rs6941521	1.00[AMR][1000 genomes]
rs9357511	0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9369609	1.00[AMR][1000 genomes]
rs9395143	0.85[LWK][hapmap]
rs9395204	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830587	chr6:12769661-12939875	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830588	chr6:12793530-12972493	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1027534	chr6:12858048-12877597	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12867400-12887600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:12867600-12886800	Weak transcription	Brain Anterior Caudate	brain
3	chr6:12867800-12876800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:12870400-12885200	Weak transcription	Brain Germinal Matrix	brain
5	chr6:12871600-12876600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:12871600-12876800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:12873800-12876200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:12874200-12876800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr6:12875200-12876000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:12875400-12885200	Weak transcription	Fetal Brain Female	brain
11	chr6:12875600-12876200	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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