Variant report

Variant	rs2184028
Chromosome Location	chr6:12790420-12790421
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12527517	1.00[AMR][1000 genomes]
rs1412745	0.85[LWK][hapmap];1.00[AMR][1000 genomes]
rs2026456	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs2151220	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs6913397	0.82[AFR][1000 genomes]
rs6941521	1.00[AMR][1000 genomes]
rs9357511	1.00[AMR][1000 genomes]
rs9369609	1.00[AMR][1000 genomes]
rs9395143	1.00[LWK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830587	chr6:12769661-12939875	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2184028	PPIC	trans	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12786000-12790800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:12790200-12790600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:12790400-12790600	Enhancers	H9 Cell Line	embryonic stem cell
4	chr6:12790400-12791000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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