Variant report

Variant	rs1415105
Chromosome Location	chr1:102315214-102315215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr1:102314978-102315296	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr1:102315007-102315269	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr1:102314988-102315274	MCF10A-Er-Src	breast:	n/a	n/a
4	FOSL1	chr1:102314880-102315365	HCT-116	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:102308106..102310001-chr1:102313421..102315280,2	K562	blood:

Variant related genes	Relation type
OLFM3	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10874524	0.91[ASN][1000 genomes]
rs11164314	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11164315	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs11164316	0.96[ASN][1000 genomes]
rs11164317	0.96[ASN][1000 genomes]
rs11164318	0.88[EUR][1000 genomes]
rs1120398	0.96[ASN][1000 genomes]
rs12025533	0.99[ASN][1000 genomes]
rs12026338	0.98[ASN][1000 genomes]
rs12028754	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12033269	0.98[ASN][1000 genomes]
rs12035099	0.91[ASN][1000 genomes]
rs12041588	0.98[ASN][1000 genomes]
rs12059847	0.89[EUR][1000 genomes]
rs12062147	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs12117918	0.90[ASN][1000 genomes]
rs12139929	0.90[ASN][1000 genomes]
rs1319726	0.95[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs1336792	0.95[ASN][1000 genomes]
rs1415098	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1415100	0.96[ASN][1000 genomes]
rs1415103	0.99[ASN][1000 genomes]
rs1591591	0.95[ASN][1000 genomes]
rs17125608	0.88[EUR][1000 genomes]
rs17125611	0.88[EUR][1000 genomes]
rs17125667	0.88[JPT][hapmap]
rs1856036	0.83[ASN][1000 genomes]
rs2050571	0.96[ASN][1000 genomes]
rs2050572	0.96[ASN][1000 genomes]
rs4642900	0.96[ASN][1000 genomes]
rs56883975	0.99[ASN][1000 genomes]
rs6577276	0.96[ASN][1000 genomes]
rs6577278	0.96[ASN][1000 genomes]
rs6659134	0.96[ASN][1000 genomes]
rs6661052	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6684647	0.88[EUR][1000 genomes]
rs6693196	0.96[ASN][1000 genomes]
rs6694755	0.97[ASN][1000 genomes]
rs6702995	0.94[ASN][1000 genomes]
rs74107956	0.99[ASN][1000 genomes]
rs74107958	0.99[ASN][1000 genomes]
rs7535330	0.88[EUR][1000 genomes]
rs7543929	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs962901	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522921	chr1:102170295-102876392	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv522156	chr1:102309649-102421714	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1415105	DPH5	cis	parietal	SCAN
rs1415105	OLFM3	cis	cerebellum	SCAN
rs1415105	COL11A1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102312800-102320400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:102313600-102315800	Enhancers	Fetal Intestine Large	intestine
3	chr1:102314200-102315400	Enhancers	Brain Germinal Matrix	brain
4	chr1:102314800-102315800	Enhancers	Fetal Intestine Small	intestine
5	chr1:102315000-102315400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr1:102315200-102315600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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