Variant report

Variant	rs962901
Chromosome Location	chr1:102320815-102320816
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10874524	0.92[ASN][1000 genomes]
rs11164314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164316	0.97[ASN][1000 genomes]
rs11164317	0.97[ASN][1000 genomes]
rs1120398	0.97[ASN][1000 genomes]
rs12025533	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12026338	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12028754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs12033269	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12035099	0.92[ASN][1000 genomes]
rs12041588	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12117918	0.90[ASN][1000 genomes]
rs12139929	0.90[ASN][1000 genomes]
rs1319726	0.95[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs1336792	0.96[ASN][1000 genomes]
rs1415098	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1415100	0.97[ASN][1000 genomes]
rs1415103	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415105	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1591591	0.96[ASN][1000 genomes]
rs17125667	0.88[JPT][hapmap]
rs1856036	0.84[ASN][1000 genomes]
rs2050571	0.97[ASN][1000 genomes]
rs2050572	0.97[ASN][1000 genomes]
rs4642900	0.97[ASN][1000 genomes]
rs56883975	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577276	0.95[ASN][1000 genomes]
rs6577278	0.97[ASN][1000 genomes]
rs6659134	0.97[ASN][1000 genomes]
rs6661052	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6693196	0.97[ASN][1000 genomes]
rs6694755	0.96[ASN][1000 genomes]
rs6702995	0.95[ASN][1000 genomes]
rs74107956	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74107958	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7543929	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522921	chr1:102170295-102876392	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv522156	chr1:102309649-102421714	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102319600-102323200	Weak transcription	Fetal Intestine Large	intestine
2	chr1:102320400-102321000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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