Variant report
Variant | rs1415349 |
---|---|
Chromosome Location | chr1:103526030-103526031 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11164661 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11811018 | 0.82[CEU][hapmap] |
rs12116763 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12116792 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12118796 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs12119971 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs12121661 | 0.82[CEU][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs12121762 | 0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs12122632 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12123205 | 0.85[EUR][1000 genomes] |
rs12124555 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12127576 | 0.85[EUR][1000 genomes] |
rs12128196 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs12129078 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12130683 | 0.85[EUR][1000 genomes] |
rs12131097 | 0.89[CEU][hapmap];0.82[EUR][1000 genomes] |
rs12131383 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs12131399 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs12131769 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12131957 | 0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs12132053 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs12135531 | 0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs12136577 | 0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs12136865 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12138447 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs12140023 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs12140064 | 0.80[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs12140473 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs12142411 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12726009 | 0.92[YRI][hapmap] |
rs12726958 | 0.94[YRI][hapmap] |
rs12729602 | 0.81[YRI][hapmap] |
rs12731843 | 0.84[YRI][hapmap] |
rs12738133 | 0.83[YRI][hapmap] |
rs12744488 | 0.94[YRI][hapmap] |
rs1337174 | 0.94[YRI][hapmap] |
rs1337175 | 0.94[YRI][hapmap] |
rs1337181 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1337184 | 0.82[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1337185 | 1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1337187 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1337189 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13375668 | 0.83[EUR][1000 genomes] |
rs1415353 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1415354 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1463035 | 0.81[CEU][hapmap] |
rs17507469 | 0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs1953672 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1953673 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1953674 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2252146 | 0.84[YRI][hapmap] |
rs2376279 | 0.87[YRI][hapmap] |
rs2622838 | 0.81[YRI][hapmap] |
rs2622839 | 0.81[YRI][hapmap] |
rs2622857 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs2622875 | 0.81[YRI][hapmap] |
rs2622876 | 0.81[YRI][hapmap] |
rs2622877 | 0.81[YRI][hapmap] |
rs2622880 | 0.84[YRI][hapmap] |
rs2622881 | 0.81[YRI][hapmap] |
rs2786120 | 0.81[YRI][hapmap] |
rs2786122 | 0.83[YRI][hapmap] |
rs2929163 | 0.82[YRI][hapmap] |
rs2971984 | 0.81[YRI][hapmap] |
rs4489579 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs4497231 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs4908285 | 0.89[CEU][hapmap] |
rs58982976 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61816504 | 0.82[EUR][1000 genomes] |
rs61816509 | 0.85[EUR][1000 genomes] |
rs61816511 | 0.85[EUR][1000 genomes] |
rs61816512 | 0.85[EUR][1000 genomes] |
rs61816513 | 0.85[EUR][1000 genomes] |
rs61816515 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61816516 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs61817081 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61817082 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs61817084 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61817085 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61817086 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6577346 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6577347 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6577348 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6577349 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6668897 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9645399 | 0.84[AMR][1000 genomes];0.80[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv522922 | chr1:103305021-103764640 | Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv870600 | chr1:103336601-103548497 | Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv871475 | chr1:103339272-103548497 | Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv871078 | chr1:103352451-103548497 | Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
5 | nsv870607 | chr1:103362909-103528128 | Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
6 | nsv870995 | chr1:103384610-103548497 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
7 | nsv871372 | chr1:103403752-103564540 | Strong transcription Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
8 | nsv871736 | chr1:103409100-103548497 | Strong transcription Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
9 | nsv871657 | chr1:103427381-103528128 | Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
10 | nsv462783 | chr1:103438795-103548497 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
11 | nsv546937 | chr1:103438795-103548497 | Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
12 | nsv462794 | chr1:103450196-103539007 | Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
13 | nsv546938 | chr1:103450196-103539007 | Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
14 | nsv871286 | chr1:103455217-103528128 | Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
15 | nsv830893 | chr1:103458498-103635579 | Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
16 | nsv871365 | chr1:103476179-103548497 | Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:103449200-103545200 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
2 | chr1:103517400-103557200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
3 | chr1:103517600-103550800 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
4 | chr1:103519600-103543000 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
5 | chr1:103522400-103559000 | Weak transcription | HSMM | muscle |
6 | chr1:103523800-103538600 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
7 | chr1:103525000-103536000 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
8 | chr1:103525000-103540400 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
9 | chr1:103525200-103539800 | Strong transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |