Variant report

Variant	rs1415482
Chromosome Location	chr6:102157814-102157815
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1337411	0.82[AFR][1000 genomes]
rs1856134	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2248660	0.89[CEU][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2248893	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2248984	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2254676	0.91[EUR][1000 genomes]
rs2518296	0.89[CEU][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2518297	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2518298	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs2518306	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2764234	0.88[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2852564	0.89[ASW][hapmap];1.00[CEU][hapmap];0.90[JPT][hapmap];0.82[MKK][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2852566	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs2852568	0.81[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs2852569	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6942125	0.90[CEU][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap]
rs7745860	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs7752976	0.81[CEU][hapmap];0.85[YRI][hapmap]
rs9399725	0.88[CEU][hapmap];0.89[JPT][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs949395	0.89[CEU][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap]
rs9498669	0.81[CEU][hapmap];0.83[TSI][hapmap]
rs9498670	0.81[CEU][hapmap]
rs9498671	0.81[CEU][hapmap];0.85[YRI][hapmap]
rs9498672	0.81[CEU][hapmap];0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv463993	chr6:102084491-102165329	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604317	chr6:102084491-102165329	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1016167	chr6:102152010-102198914	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102149400-102158000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:102154800-102158000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:102154800-102158000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:102155200-102170600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:102157200-102158000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:102157800-102158000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:102157800-102158200	Enhancers	HUES64 Cell Line	embryonic stem cell

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