Variant report

Variant	rs2852564
Chromosome Location	chr6:102130209-102130210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1415482	0.89[ASW][hapmap];1.00[CEU][hapmap];0.90[JPT][hapmap];0.82[MKK][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1856134	0.90[CEU][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2248660	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2248893	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2248984	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2254676	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2518296	0.90[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2518297	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs2518298	0.89[ASW][hapmap];1.00[CEU][hapmap];0.90[JPT][hapmap];0.91[LWK][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap]
rs2518306	0.90[CEU][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2764234	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2852566	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2852568	0.96[YRI][hapmap]
rs2852569	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6942125	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs7745860	0.89[CEU][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9399725	0.89[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs949395	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9498669	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538392	chr6:101938381-102148360	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv463993	chr6:102084491-102165329	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604317	chr6:102084491-102165329	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv933081	chr6:102124766-102130637	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102125800-102130400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:102129600-102130400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr6:102129600-102130600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:102129600-102130800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:102129600-102130800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:102130000-102130400	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr6:102130000-102130600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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