Variant report

Variant	rs1415745
Chromosome Location	chr6:146064889-146064890
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000112425	Chromatin interaction
ENSG00000270828	Chromatin interaction
ENSG00000118496	Chromatin interaction
ENSG00000270638	Chromatin interaction
ENSG00000235652	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1292335	1.00[ASW][hapmap]
rs1539380	0.94[CEU][hapmap];1.00[AFR][1000 genomes]
rs17823001	0.87[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1415745	SHPRH	cis	parietal	SCAN
rs1415745	SHPRH	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146058200-146067600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:146058400-146065200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:146058600-146070600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:146064600-146065000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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