Variant report

Variant	rs1292335
Chromosome Location	chr6:145967877-145967878
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 172 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:172)

rs_ID	r²[population]
rs1004752	0.82[CEU][hapmap]
rs1011596	0.82[CEU][hapmap]
rs1011597	0.81[CEU][hapmap]
rs1045820	0.82[CEU][hapmap]
rs10872579	0.81[CEU][hapmap]
rs110289	0.86[EUR][1000 genomes]
rs12663211	0.81[EUR][1000 genomes]
rs1292333	0.82[CEU][hapmap]
rs1292334	0.82[CEU][hapmap]
rs1292336	0.82[CEU][hapmap]
rs1292337	0.82[CEU][hapmap]
rs1292339	0.89[CEU][hapmap];0.81[GIH][hapmap];0.87[EUR][1000 genomes]
rs1337839	0.82[CEU][hapmap]
rs1337841	0.82[CEU][hapmap]
rs1355146	0.87[EUR][1000 genomes]
rs1396648	0.96[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs1415744	0.82[CEU][hapmap]
rs1415745	1.00[ASW][hapmap]
rs1883365	0.82[CEU][hapmap]
rs1883406	0.82[EUR][1000 genomes]
rs1883407	0.88[EUR][1000 genomes]
rs1890171	0.82[CEU][hapmap]
rs1935617	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2050027	0.82[CEU][hapmap]
rs2092263	0.82[CEU][hapmap]
rs2328704	0.89[CEU][hapmap]
rs365515	0.87[EUR][1000 genomes]
rs365658	0.85[EUR][1000 genomes]
rs366621	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs367612	0.91[EUR][1000 genomes]
rs368848	0.85[EUR][1000 genomes]
rs369214	0.85[EUR][1000 genomes]
rs372378	0.82[EUR][1000 genomes]
rs373313	0.85[EUR][1000 genomes]
rs373321	0.85[EUR][1000 genomes]
rs373527	0.86[EUR][1000 genomes]
rs373704	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs373778	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs374000	0.85[EUR][1000 genomes]
rs374464	0.91[EUR][1000 genomes]
rs374728	0.85[EUR][1000 genomes]
rs375873	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs376991	0.85[EUR][1000 genomes]
rs377130	0.85[EUR][1000 genomes]
rs377143	0.91[EUR][1000 genomes]
rs379164	0.85[EUR][1000 genomes]
rs380883	0.82[EUR][1000 genomes]
rs382910	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs384453	0.82[EUR][1000 genomes]
rs384519	0.84[EUR][1000 genomes]
rs385134	0.84[EUR][1000 genomes]
rs386344	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs386678	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs387965	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs388394	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs388728	0.82[EUR][1000 genomes]
rs390252	0.85[EUR][1000 genomes]
rs391524	0.82[EUR][1000 genomes]
rs391820	0.88[EUR][1000 genomes]
rs392014	0.91[EUR][1000 genomes]
rs395948	0.81[EUR][1000 genomes]
rs396492	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs396681	0.83[EUR][1000 genomes]
rs397418	0.85[EUR][1000 genomes]
rs399089	0.85[EUR][1000 genomes]
rs400968	0.87[EUR][1000 genomes]
rs401888	0.85[EUR][1000 genomes]
rs404229	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs405622	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs406343	0.86[EUR][1000 genomes]
rs406799	0.82[EUR][1000 genomes]
rs407721	0.86[EUR][1000 genomes]
rs408768	0.86[EUR][1000 genomes]
rs411468	0.85[EUR][1000 genomes]
rs411641	0.85[EUR][1000 genomes]
rs413880	0.87[EUR][1000 genomes]
rs413916	0.85[EUR][1000 genomes]
rs414222	0.84[EUR][1000 genomes]
rs414646	0.85[EUR][1000 genomes]
rs415590	0.84[EUR][1000 genomes]
rs416243	0.86[EUR][1000 genomes]
rs416987	0.82[EUR][1000 genomes]
rs418662	0.91[EUR][1000 genomes]
rs419847	0.85[EUR][1000 genomes]
rs419850	0.85[EUR][1000 genomes]
rs419854	0.85[EUR][1000 genomes]
rs419991	0.86[EUR][1000 genomes]
rs421032	0.91[EUR][1000 genomes]
rs421268	0.84[EUR][1000 genomes]
rs421690	0.85[EUR][1000 genomes]
rs425731	0.85[EUR][1000 genomes]
rs428659	0.85[EUR][1000 genomes]
rs429306	0.85[EUR][1000 genomes]
rs430003	0.81[EUR][1000 genomes]
rs430248	0.85[EUR][1000 genomes]
rs430561	0.82[EUR][1000 genomes]
rs434298	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs436066	0.91[EUR][1000 genomes]
rs436212	0.84[EUR][1000 genomes]
rs4383831	0.82[EUR][1000 genomes]
rs439017	0.87[EUR][1000 genomes]
rs441364	0.92[EUR][1000 genomes]
rs441477	0.91[EUR][1000 genomes]
rs441575	0.83[EUR][1000 genomes]
rs442254	0.84[EUR][1000 genomes]
rs442435	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs444564	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs446242	0.85[EUR][1000 genomes]
rs447818	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs449377	0.85[EUR][1000 genomes]
rs450076	0.91[EUR][1000 genomes]
rs450973	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs451349	0.82[EUR][1000 genomes]
rs452552	0.82[EUR][1000 genomes]
rs452770	0.84[EUR][1000 genomes]
rs453609	0.82[EUR][1000 genomes]
rs454370	0.84[EUR][1000 genomes]
rs454614	0.85[EUR][1000 genomes]
rs455109	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4895678	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4895683	0.81[CEU][hapmap]
rs4896829	0.87[EUR][1000 genomes]
rs4896831	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs4896832	0.82[CEU][hapmap]
rs4896833	0.82[CEU][hapmap]
rs4896838	0.82[CEU][hapmap]
rs585292	0.85[EUR][1000 genomes]
rs636894	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs640544	0.84[EUR][1000 genomes]
rs6570701	0.82[CEU][hapmap]
rs6570703	0.85[CEU][hapmap]
rs6570705	0.82[CEU][hapmap]
rs6570723	0.81[CEU][hapmap]
rs6570726	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs6903252	0.85[EUR][1000 genomes]
rs6930154	0.85[CEU][hapmap]
rs702313	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7739735	0.82[CEU][hapmap]
rs7744014	0.82[CEU][hapmap]
rs7753770	0.82[CEU][hapmap]
rs7772286	0.85[EUR][1000 genomes]
rs857875	0.82[CEU][hapmap]
rs857877	0.82[CEU][hapmap]
rs857879	0.82[CEU][hapmap]
rs857880	0.82[CEU][hapmap]
rs857882	0.82[CEU][hapmap]
rs857883	0.82[CEU][hapmap]
rs9373476	0.82[CEU][hapmap]
rs9376955	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs9376956	0.82[CEU][hapmap]
rs9376957	0.82[CEU][hapmap]
rs9376961	0.82[CEU][hapmap]
rs9390326	0.87[EUR][1000 genomes]
rs9390327	0.85[EUR][1000 genomes]
rs9390329	0.91[EUR][1000 genomes]
rs9390343	0.88[CEU][hapmap]
rs9390344	0.92[CEU][hapmap]
rs9390357	0.82[CEU][hapmap]
rs9399549	0.87[EUR][1000 genomes]
rs9403706	0.87[EUR][1000 genomes]
rs9403707	0.87[EUR][1000 genomes]
rs9403737	0.82[CEU][hapmap]
rs9403739	0.82[CEU][hapmap]
rs9403741	0.82[CEU][hapmap]
rs9403742	0.89[CEU][hapmap]
rs9484995	0.86[EUR][1000 genomes]
rs9485018	0.81[CEU][hapmap]
rs9497316	0.86[EUR][1000 genomes]
rs9497380	0.82[CEU][hapmap]
rs9497395	0.82[CEU][hapmap]
rs951143	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs973855	0.87[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1292335	SHPRH	cis	cerebellum	SCAN
rs1292335	SHPRH	cis	parietal	SCAN
rs1292335	EPM2A	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145949000-145968000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:145950800-145977400	Weak transcription	Aorta	Aorta
3	chr6:145950800-145990600	Weak transcription	Primary B cells from cord blood	blood
4	chr6:145951000-146003000	Weak transcription	Thymus	Thymus
5	chr6:145951400-146003000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:145952200-145983200	Weak transcription	Primary T cells from cord blood	blood
7	chr6:145955200-145976800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:145955600-145977400	Weak transcription	Left Ventricle	heart
9	chr6:145960200-145978800	Weak transcription	Fetal Heart	heart

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