Variant report

Variant	rs9403742
Chromosome Location	chr6:146060193-146060194
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146055707..146058502-chr6:146058595..146061607,5	MCF-7	breast:
2	chr6:145647693..145649970-chr6:146059926..146061637,2	MCF-7	breast:
3	chr6:146052168..146062191-chr6:146124046..146141258,59	K562	blood:
4	chr6:146047378..146061811-chr6:146118130..146137627,77	K562	blood:

Variant related genes	Relation type
ENSG00000235652	Chromatin interaction
ENSG00000118496	Chromatin interaction
ENSG00000270828	Chromatin interaction
ENSG00000112425	Chromatin interaction
ENSG00000270638	Chromatin interaction

Extended variants
information (count: 237 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:236)

rs_ID	r²[population]
rs1004752	0.93[CEU][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1011596	0.88[ASW][hapmap];0.93[CEU][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1011597	0.92[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10214925	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10447449	0.82[EUR][1000 genomes]
rs1045820	0.88[ASW][hapmap];0.93[CEU][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.95[TSI][hapmap]
rs1055212	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1062067	0.82[JPT][hapmap]
rs1062068	0.82[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap]
rs1070517	0.82[ASN][1000 genomes]
rs1070519	0.82[ASN][1000 genomes]
rs10872579	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs10872580	0.89[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[JPT][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11155435	0.80[ASN][1000 genomes]
rs11155438	0.89[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs11155442	0.82[EUR][1000 genomes]
rs1133832	0.82[CEU][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap];0.80[TSI][hapmap]
rs11965018	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12190966	0.81[EUR][1000 genomes]
rs12199362	0.89[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12208019	0.80[ASN][1000 genomes]
rs12211884	0.82[ASN][1000 genomes]
rs1292333	0.93[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1292334	0.93[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.95[TSI][hapmap];0.84[ASN][1000 genomes]
rs1292335	0.89[CEU][hapmap]
rs1292336	0.93[CEU][hapmap];0.90[JPT][hapmap]
rs1292337	0.88[ASW][hapmap];0.93[CEU][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap]
rs1292339	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13214277	0.84[ASN][1000 genomes]
rs1337839	0.93[CEU][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1337840	1.00[ASW][hapmap];0.81[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1337841	0.93[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13437042	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1415744	0.88[ASW][hapmap];0.93[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1415746	0.89[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1415747	0.89[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1569540	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1577916	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1832362	0.85[CEU][hapmap];0.81[JPT][hapmap]
rs1883365	0.93[CEU][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1890171	0.89[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2050027	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2064185	0.91[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2072911	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2092262	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2092263	0.92[CEU][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2096201	0.80[ASN][1000 genomes]
rs2142978	0.85[JPT][hapmap]
rs2142980	0.85[JPT][hapmap]
rs2142981	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2142983	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2243665	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs2247317	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs2247666	0.82[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap]
rs2249386	0.89[CEU][hapmap];0.93[CHB][hapmap];0.86[CHD][hapmap];0.84[TSI][hapmap]
rs2250387	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs2253307	0.85[CEU][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap]
rs2253648	0.96[CEU][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs2253654	0.85[CEU][hapmap];0.93[CHB][hapmap]
rs2253757	0.85[JPT][hapmap]
rs2253764	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs2253768	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs2254283	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs2254288	0.82[CEU][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap];0.80[TSI][hapmap]
rs2265471	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs2265472	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs2265477	0.92[CEU][hapmap];0.82[JPT][hapmap];0.90[MEX][hapmap];0.85[MKK][hapmap];0.82[TSI][hapmap]
rs2265917	0.82[CEU][hapmap];0.85[JPT][hapmap]
rs2265919	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs2328704	1.00[CEU][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2328707	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2328709	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2485631	0.85[JPT][hapmap]
rs2814880	0.83[CEU][hapmap]
rs3811102	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3924499	0.82[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap]
rs3924502	0.82[CEU][hapmap];0.87[CHB][hapmap]
rs4075694	0.82[CEU][hapmap];0.87[CHB][hapmap]
rs4075695	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs4360151	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs4455694	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4895683	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4895684	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4896829	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4896831	1.00[CEU][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4896832	0.92[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs4896833	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs4896837	0.89[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4896838	0.89[CEU][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes]
rs4896839	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4896841	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4896842	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4896843	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4896844	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55810423	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57700188	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62433835	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62435810	0.81[ASN][1000 genomes]
rs6570701	0.93[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs6570703	0.95[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap]
rs6570705	0.88[ASW][hapmap];0.93[CEU][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap]
rs6570706	0.86[JPT][hapmap]
rs6570708	0.89[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.89[TSI][hapmap];0.80[ASN][1000 genomes]
rs6570713	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6570715	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6570716	0.86[ASN][1000 genomes]
rs6570717	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6570719	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6570723	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs6570726	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs6570732	0.87[JPT][hapmap]
rs6900175	0.81[JPT][hapmap]
rs6901888	0.89[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6902913	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6903252	0.83[EUR][1000 genomes]
rs6906258	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6906402	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6915718	0.89[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[JPT][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6917135	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs6921073	0.81[EUR][1000 genomes]
rs6922507	0.82[CEU][hapmap];0.87[CHB][hapmap]
rs6923545	0.82[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap]
rs6923678	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6926076	0.83[CEU][hapmap];0.80[JPT][hapmap]
rs6928007	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6930154	0.92[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6930181	0.85[CEU][hapmap]
rs6931553	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6932863	0.90[ASN][1000 genomes]
rs6933161	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6937661	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6941429	0.89[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs697053	0.89[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.89[TSI][hapmap];0.82[ASN][1000 genomes]
rs697054	0.89[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs697055	0.89[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs697056	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs702304	0.89[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.89[TSI][hapmap];0.82[ASN][1000 genomes]
rs702305	0.84[ASN][1000 genomes]
rs702306	0.84[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs702307	0.89[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs702313	0.82[EUR][1000 genomes]
rs702314	0.86[EUR][1000 genomes]
rs702316	0.85[JPT][hapmap]
rs702317	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs702318	0.89[CEU][hapmap];0.87[GIH][hapmap];0.85[JPT][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs702319	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs702320	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs702321	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs702322	0.85[JPT][hapmap]
rs702323	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs702324	0.89[CEU][hapmap];0.85[GIH][hapmap];0.85[JPT][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs735535	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs735536	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7739735	0.93[CEU][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7740785	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7742333	0.85[CEU][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap]
rs7744014	0.93[CEU][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7745696	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs7752286	0.89[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7753092	0.81[CEU][hapmap];0.87[CHB][hapmap]
rs7753273	0.85[JPT][hapmap]
rs7753770	0.89[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7762536	0.82[ASN][1000 genomes]
rs7762562	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs7772286	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7772717	0.82[ASN][1000 genomes]
rs7773939	0.82[ASN][1000 genomes]
rs857875	0.88[ASW][hapmap];0.93[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.84[ASN][1000 genomes]
rs857877	0.93[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.95[TSI][hapmap];0.84[ASN][1000 genomes]
rs857879	0.93[CEU][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap]
rs857880	0.93[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs857881	0.89[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs857882	0.93[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs857883	0.92[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs864148	0.82[ASN][1000 genomes]
rs9373467	0.81[JPT][hapmap]
rs9373471	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9373473	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9373475	0.89[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9373476	0.89[CEU][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs9376955	1.00[CEU][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9376956	0.93[CEU][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap]
rs9376957	0.93[CEU][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9376961	0.88[ASW][hapmap];0.93[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9376970	0.82[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap]
rs9376971	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs9386128	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9386131	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9386132	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9386133	0.89[CEU][hapmap];0.90[JPT][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs9386134	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9386136	0.85[JPT][hapmap]
rs9390343	1.00[CEU][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9390344	1.00[CEU][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9390348	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9390349	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9390353	1.00[CHB][hapmap]
rs9390354	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9390355	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9390356	0.89[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9390357	0.93[CEU][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9390358	0.89[CEU][hapmap];0.90[JPT][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs9390365	0.81[CEU][hapmap];0.87[CHB][hapmap]
rs9399561	0.89[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.89[TSI][hapmap];0.82[ASN][1000 genomes]
rs9399564	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9399565	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9399567	0.89[ASN][1000 genomes]
rs9403734	0.80[ASN][1000 genomes]
rs9403735	0.80[ASN][1000 genomes]
rs9403737	0.93[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs9403739	0.93[CEU][hapmap];0.89[GIH][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9403741	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9403746	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9403747	0.85[CEU][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9403749	0.85[CEU][hapmap];0.93[CHB][hapmap];0.86[CHD][hapmap];0.85[TSI][hapmap];0.81[ASN][1000 genomes]
rs9403750	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs9403755	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs9403756	0.82[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap]
rs9485017	0.85[JPT][hapmap]
rs9485018	0.92[CEU][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9485019	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9485021	0.90[JPT][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9485024	0.89[CEU][hapmap];0.90[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs9497380	0.88[ASW][hapmap];0.93[CEU][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap]
rs9497395	0.88[ASW][hapmap];0.93[CEU][hapmap];0.87[GIH][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9497396	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9497398	0.82[ASN][1000 genomes]
rs9497401	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9497406	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9497419	0.82[EUR][1000 genomes]
rs9497424	0.82[CEU][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap];0.80[TSI][hapmap]
rs9497425	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs9497427	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs9497431	0.82[CEU][hapmap];0.87[CHB][hapmap]
rs952406	0.82[ASN][1000 genomes]
rs991507	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970354	chr6:146057495-146060252	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9403742	EPM2A	cis	parietal	SCAN
rs9403742	SHPRH	cis	cerebellum	SCAN
rs9403742	SHPRH	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146057200-146063200	Weak transcription	Lung	lung
2	chr6:146058200-146067600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:146058400-146063000	Weak transcription	Thymus	Thymus
4	chr6:146058400-146064600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:146058400-146065200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:146058600-146070600	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

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