Variant report

Variant	rs9497425
Chromosome Location	chr6:146234197-146234198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146230814..146232916-chr6:146233630..146237382,3	K562	blood:
2	chr6:146233246..146236996-chr6:146247458..146250759,3	K562	blood:
3	chr6:146234113..146237029-chr6:146245031..146246737,2	K562	blood:

Variant related genes	Relation type
ENSG00000146414	Chromatin interaction

Extended variants
information (count: 205 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:203)

rs_ID	r²[population]
rs1004752	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs1011596	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs1011597	0.88[CEU][hapmap]
rs10223507	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10223508	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10447449	0.84[ASN][1000 genomes]
rs1062067	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1062068	1.00[CEU][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes]
rs10872580	0.92[CEU][hapmap]
rs10872582	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10872583	0.81[EUR][1000 genomes]
rs11155442	0.84[ASN][1000 genomes]
rs1133832	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11755334	0.81[EUR][1000 genomes]
rs11760	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12190966	0.84[ASN][1000 genomes]
rs12199362	0.92[CEU][hapmap]
rs13198450	0.83[EUR][1000 genomes]
rs1331634	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs1331636	0.87[EUR][1000 genomes]
rs1331637	0.87[EUR][1000 genomes]
rs1331645	0.82[EUR][1000 genomes]
rs1337840	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs1337841	0.89[CEU][hapmap]
rs13437042	0.82[ASN][1000 genomes]
rs1415746	0.92[CEU][hapmap]
rs1415747	0.92[CEU][hapmap]
rs1474871	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1832362	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.87[AFR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1883365	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs1890171	0.93[CEU][hapmap]
rs1986729	0.83[EUR][1000 genomes]
rs2050027	0.93[CEU][hapmap]
rs2064185	0.91[CEU][hapmap]
rs2073287	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2144478	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2207785	0.87[EUR][1000 genomes]
rs2224120	0.96[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs2224121	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2243665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2247206	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2247211	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2247317	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2247429	0.95[EUR][1000 genomes]
rs2247666	1.00[CEU][hapmap];0.82[JPT][hapmap];0.96[EUR][1000 genomes]
rs2249147	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2249386	0.96[CEU][hapmap];0.82[JPT][hapmap]
rs2250387	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2253194	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2253307	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2253648	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2253654	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs2253764	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2253768	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2253880	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2253886	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2253887	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2254257	0.95[EUR][1000 genomes]
rs2254283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2254288	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2256998	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2265467	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2265468	0.96[EUR][1000 genomes]
rs2265469	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2265471	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2265472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2265477	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2265915	0.82[EUR][1000 genomes]
rs2265916	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2265917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2265918	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2265919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2328712	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2474356	0.88[EUR][1000 genomes]
rs2485632	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2492855	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2748482	0.87[EUR][1000 genomes]
rs2748483	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2748484	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2748485	0.86[EUR][1000 genomes]
rs2748486	0.80[EUR][1000 genomes]
rs2748499	0.88[EUR][1000 genomes]
rs2748500	0.82[ASN][1000 genomes]
rs2748502	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2777476	0.87[EUR][1000 genomes]
rs2777477	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2777484	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2814863	0.96[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap]
rs2814866	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2814867	0.86[EUR][1000 genomes]
rs2814869	0.88[EUR][1000 genomes]
rs2814874	0.96[CEU][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs2814875	0.96[CEU][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes]
rs2814876	0.88[EUR][1000 genomes]
rs2814877	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs2814879	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2814880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2892453	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3811102	0.96[CEU][hapmap]
rs3923579	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3924498	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3924499	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3924502	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4075694	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4075695	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4075696	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4243478	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4280983	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs4314514	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4316025	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4360151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4391282	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4435956	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4566902	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895683	0.92[CEU][hapmap]
rs4895684	0.81[ASN][1000 genomes]
rs4896851	0.80[CEU][hapmap]
rs4896852	0.96[EUR][1000 genomes]
rs56181683	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6570723	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6570724	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6570736	0.83[EUR][1000 genomes]
rs6570738	0.82[AMR][1000 genomes]
rs6902913	0.83[ASN][1000 genomes]
rs6906258	0.93[CEU][hapmap]
rs6906402	0.93[CEU][hapmap]
rs6908063	0.80[EUR][1000 genomes]
rs6910790	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6914813	0.81[EUR][1000 genomes]
rs6915718	0.92[CEU][hapmap]
rs6917135	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6917482	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921073	0.84[ASN][1000 genomes]
rs6922507	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6923545	1.00[CEU][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6924159	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6926076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926657	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6928007	0.81[ASN][1000 genomes]
rs6930975	0.83[EUR][1000 genomes]
rs6933161	0.82[ASN][1000 genomes]
rs7739418	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7739735	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs7740785	0.93[ASN][1000 genomes]
rs7742333	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7744014	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs7745696	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7747576	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7752286	0.92[CEU][hapmap]
rs7753092	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7753696	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7753770	0.93[CEU][hapmap]
rs7755440	0.83[EUR][1000 genomes]
rs7762562	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs854145	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs863820	0.96[CEU][hapmap];0.82[JPT][hapmap]
rs864390	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs866473	0.84[EUR][1000 genomes]
rs9322043	0.84[EUR][1000 genomes]
rs9322046	0.82[EUR][1000 genomes]
rs9322047	0.81[EUR][1000 genomes]
rs9322048	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs932522	0.83[EUR][1000 genomes]
rs9373473	0.82[ASN][1000 genomes]
rs9373475	0.92[CEU][hapmap]
rs9373476	0.93[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs9376961	0.89[CEU][hapmap]
rs9376968	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9376970	1.00[CEU][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9376971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9376975	0.84[EUR][1000 genomes]
rs9386131	0.83[ASN][1000 genomes]
rs9386133	0.92[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs9386141	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9390354	0.83[ASN][1000 genomes]
rs9390356	0.92[CEU][hapmap]
rs9390357	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs9390358	0.92[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs9390365	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9390377	0.83[EUR][1000 genomes]
rs9399565	0.82[ASN][1000 genomes]
rs9399567	0.80[EUR][1000 genomes]
rs9399569	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9399571	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9403742	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs9403747	0.81[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs9403749	0.96[CEU][hapmap];0.82[JPT][hapmap]
rs9403750	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9403755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403756	1.00[CEU][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9403757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9403764	0.83[EUR][1000 genomes]
rs9403765	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9485021	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs9485024	0.92[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.84[ASN][1000 genomes]
rs9497419	0.84[ASN][1000 genomes]
rs9497424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9497427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9497431	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9497434	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9497435	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs969694	0.81[EUR][1000 genomes]
rs9791313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9497425	RP11-545I5.3	cis	Esophagus Muscularis	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146207800-146240200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:146210400-146282000	Weak transcription	Spleen	Spleen
3	chr6:146211600-146236000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:146215000-146242200	Weak transcription	Hela-S3	cervix
5	chr6:146219200-146249200	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:146219200-146276600	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:146219600-146250600	Strong transcription	Dnd41	blood
8	chr6:146219800-146271400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:146220000-146249400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:146220000-146255200	Weak transcription	Gastric	stomach
11	chr6:146220000-146259400	Weak transcription	Esophagus	oesophagus
12	chr6:146220000-146276800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:146220000-146283200	Weak transcription	Small Intestine	intestine
14	chr6:146220200-146268400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:146220400-146255200	Weak transcription	Fetal Intestine Small	intestine
16	chr6:146223800-146248600	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr6:146224600-146257000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:146224800-146235800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:146224800-146235800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:146224800-146235800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr6:146224800-146237200	Strong transcription	H1 Cell Line	embryonic stem cell
22	chr6:146225200-146268600	Weak transcription	Stomach Mucosa	stomach
23	chr6:146225400-146235000	Strong transcription	Brain Germinal Matrix	brain
24	chr6:146225400-146248400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:146225400-146249600	Strong transcription	Adipose Nuclei	Adipose
26	chr6:146225600-146235800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:146225600-146237600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:146225800-146235600	Strong transcription	Placenta	Placenta
29	chr6:146225800-146243800	Weak transcription	Psoas Muscle	Psoas
30	chr6:146226000-146249000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:146226000-146249600	Strong transcription	Liver	Liver
32	chr6:146226200-146284200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:146226400-146236200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:146226400-146268600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:146226600-146236200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr6:146226600-146249200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr6:146226800-146235600	Strong transcription	Fetal Brain Female	brain
38	chr6:146226800-146249400	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr6:146226800-146270400	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr6:146227000-146235800	Strong transcription	Fetal Muscle Trunk	muscle
41	chr6:146227200-146236000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr6:146227200-146248400	Strong transcription	Duodenum Mucosa	Duodenum
43	chr6:146227200-146268800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr6:146227400-146236200	Strong transcription	Fetal Kidney	kidney
45	chr6:146227400-146241200	Strong transcription	Primary hematopoietic stem cells	blood
46	chr6:146227400-146248400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:146227600-146248400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:146227800-146234800	Strong transcription	Brain Cingulate Gyrus	brain
49	chr6:146227800-146235800	Strong transcription	Brain Inferior Temporal Lobe	brain
50	chr6:146227800-146248200	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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