Variant report

Variant	rs854145
Chromosome Location	chr6:146349650-146349651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr6:146349196-146349846	A549	lung:	n/a	n/a
2	ELF1	chr6:146349405-146349748	A549	lung:	n/a	chr6:146349580-146349593 chr6:146349583-146349592 chr6:146349582-146349593 chr6:146349582-146349593
3	SIN3AK20	chr6:146349369-146349734	H1-hESC	embryonic stem cell:	n/a	n/a
4	JUND	chr6:146349363-146349725	H1-hESC	embryonic stem cell:	n/a	n/a
5	ELF1	chr6:146349346-146349809	SK-N-SH	brain:	n/a	chr6:146349580-146349593 chr6:146349583-146349592 chr6:146349582-146349593 chr6:146349582-146349593
6	REST	chr6:146349410-146349687	SK-N-SH	brain:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
7	TBP	chr6:146349495-146349656	K562	blood:	n/a	n/a
8	REST	chr6:146348793-146349894	HL-60	blood:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
9	TEAD4	chr6:146349250-146349727	H1-hESC	embryonic stem cell:	n/a	n/a
10	REST	chr6:146349115-146349829	SK-N-SH	brain:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
11	REST	chr6:146349107-146349772	HepG2	liver:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
12	REST	chr6:146348933-146350158	ECC-1	luminal epithelium:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
13	REST	chr6:146349374-146349688	GM12878	blood:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
14	ELF1	chr6:146349406-146349725	GM12878	blood:	n/a	chr6:146349580-146349593 chr6:146349583-146349592 chr6:146349582-146349593 chr6:146349582-146349593
15	REST	chr6:146349134-146349774	GM12878	blood:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
16	RAD21	chr6:146349287-146349708	ECC-1	luminal epithelium:	n/a	n/a
17	ZNF143	chr6:146349357-146349728	K562	blood:	n/a	n/a
18	ZNF143	chr6:146349360-146349727	GM12878	blood:	n/a	n/a
19	RCOR1	chr6:146349361-146349737	K562	blood:	n/a	n/a
20	REST	chr6:146348890-146350188	ECC-1	luminal epithelium:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
21	REST	chr6:146348585-146350546	PFSK-1	brain:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
22	ELF1	chr6:146349399-146349755	A549	lung:	n/a	chr6:146349580-146349593 chr6:146349583-146349592 chr6:146349582-146349593 chr6:146349582-146349593
23	ELF1	chr6:146349309-146349826	K562	blood:	n/a	chr6:146349580-146349593 chr6:146349583-146349592 chr6:146349582-146349593 chr6:146349582-146349593
24	SIN3A	chr6:146348677-146349933	H1-hESC	embryonic stem cell:	n/a	chr6:146349533-146349543 chr6:146349534-146349548
25	REST	chr6:146349082-146349832	U87	brain:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
26	REST	chr6:146349147-146349800	PANC-1	pancreas:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
27	MYC	chr6:146349459-146349659	NB4	blood:	n/a	n/a
28	REST	chr6:146348996-146350004	A549	lung:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
29	TEAD4	chr6:146349340-146349741	K562	blood:	n/a	n/a
30	REST	chr6:146348713-146350338	PFSK-1	brain:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
31	RCOR1	chr6:146349344-146349715	HepG2	liver:	n/a	n/a
32	REST	chr6:146349215-146349837	A549	lung:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
33	ELF1	chr6:146349314-146349821	K562	blood:	n/a	chr6:146349580-146349593 chr6:146349583-146349592 chr6:146349582-146349593 chr6:146349582-146349593
34	REST	chr6:146348994-146350236	PANC-1	pancreas:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
35	ELF1	chr6:146349305-146349771	GM12878	blood:	n/a	chr6:146349580-146349593 chr6:146349583-146349592 chr6:146349582-146349593 chr6:146349582-146349593
36	ELF1	chr6:146349303-146349831	MCF-7	breast:	n/a	chr6:146349580-146349593 chr6:146349583-146349592 chr6:146349582-146349593 chr6:146349582-146349593
37	REST	chr6:146349067-146349938	K562	blood:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
38	REST	chr6:146349282-146349762	U87	brain:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
39	REST	chr6:146348600-146350478	PFSK-1	brain:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
40	REST	chr6:146349328-146349772	K562	blood:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
41	SP4	chr6:146349229-146349729	H1-hESC	embryonic stem cell:	n/a	n/a
42	REST	chr6:146349086-146350004	PANC-1	pancreas:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
43	CTCF	chr6:146349500-146349650	HAc	cerebellar:	n/a	n/a
44	TEAD4	chr6:146349257-146349781	H1-hESC	embryonic stem cell:	n/a	n/a
45	REST	chr6:146349078-146350057	HepG2	liver:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
46	REST	chr6:146349318-146349788	Hela-S3	cervix:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
47	ELF1	chr6:146349296-146349922	MCF-7	breast:	n/a	chr6:146349580-146349593 chr6:146349583-146349592 chr6:146349582-146349593 chr6:146349582-146349593
48	REST	chr6:146349104-146349871	HCT-116	colon:	n/a	chr6:146349530-146349548 chr6:146349534-146349543 chr6:146349529-146349549 chr6:146349529-146349549 chr6:146349535-146349549
49	MAFK	chr6:146349528-146349694	HepG2	liver:	n/a	n/a
50	ZNF143	chr6:146349294-146349757	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:146349638-146349688	GM12891	blood:	n/a
2	chr6:146349638-146349688	ECC-1	luminal epithelium:	n/a
3	chr6:146349638-146349688	HIPEpiC	eye:	n/a
4	chr6:146349638-146349688	Hela-S3	cervix:	n/a
5	chr6:146349638-146349688	PANC-1	pancreas:	n/a
6	chr6:146349638-146349688	SAEC	small airway:	n/a
7	chr6:146349638-146349688	GM06990	blood:	n/a
8	chr6:146349638-146349688	GM19239	blood:	n/a
9	chr6:146349638-146349688	HL-60	blood:	n/a
10	chr6:146349638-146349688	SK-N-MC	brain:	n/a
11	chr6:146349638-146349688	NH-A	brain:	n/a
12	chr6:146349638-146349688	A549	lung:	n/a
13	chr6:146349638-146349688	BJ	skin:	n/a
14	chr6:146349638-146349688	NHBE	bronchial:	n/a
15	chr6:146349638-146349688	HAEpiC	amniotic membrane:	n/a
16	chr6:146349638-146349688	MCF-7	breast:	n/a
17	chr6:146349638-146349688	AG09309	skin:	n/a
18	chr6:146349638-146349688	HRPEpiC	eye:	n/a
19	chr6:146349638-146349688	HMEC	breast:	n/a
20	chr6:146349638-146349688	GM12878	blood:	n/a
21	chr6:146349638-146349688	SK-N-SH	brain:	n/a
22	chr6:146349638-146349688	RPTEC	kidney:	n/a
23	chr6:146349638-146349688	HepG2	liver:	n/a
24	chr6:146349638-146349688	NT2-D1	testis:	n/a
25	chr6:146349638-146349688	GM12892	blood:	n/a
26	chr6:146349638-146349688	HRCEpiC	kidney:	n/a
27	chr6:146349638-146349688	AG10803	skin:	n/a
28	chr6:146349638-146349688	HEEpiC	esophagus:	n/a
29	chr6:146349638-146349688	HNPCEpiC	eye:	n/a
30	chr6:146349638-146349688	BE2_C	brain:	n/a
31	chr6:146349638-146349688	ProgFib	skin:	n/a
32	chr6:146349638-146349688	ovcar-3	ovarian:	n/a
33	chr6:146349638-146349688	PFSK-1	brain:	n/a
34	chr6:146349638-146349688	AG04449	skin:	fetal
35	chr6:146349638-146349688	H1-hESC	embryonic stem cell:	embryo
36	chr6:146349638-146349688	AG09319	gingival:	n/a
37	chr6:146349638-146349688	Hepatocyte	liver:	n/a
38	chr6:146349638-146349688	U87	brain:	n/a
39	chr6:146349638-146349688	LNCaP	prostate:	n/a
40	chr6:146349638-146349688	HUVEC	blood vessel:	n/a
41	chr6:146349638-146349688	HCM	heart:	n/a
42	chr6:146349638-146349688	HPAEpiC	pulmonary alveolar:	n/a
43	chr6:146349638-146349688	K562	blood:	n/a
44	chr6:146349638-146349688	HCPEpiC	choroid plexus:	n/a
45	chr6:146349638-146349688	Caco-2	colon:	n/a
46	chr6:146349638-146349688	NHDF-neo	bronchial:	n/a
47	chr6:146349638-146349688	HCT-116	colon:	n/a
48	chr6:146349638-146349688	AG04450	lung:	fetal
49	chr6:146349638-146349688	CMK	blood:	n/a
50	chr6:146349638-146349688	AoSMC	blood vessel:	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:99557878..99558604-chr6:146349211..146349732,2	MCF-7	breast:

Variant related genes	Relation type
GRM1	TF binding region
GRM1	CpG island

Extended variants
information (count: 138 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs10223508	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10457792	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10457793	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10457794	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10457795	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1062067	0.80[EUR][1000 genomes]
rs1062068	0.80[EUR][1000 genomes]
rs10872582	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10872583	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11155452	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11755334	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11760	0.80[EUR][1000 genomes]
rs12194437	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13198450	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13204280	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1331636	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1331637	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1331639	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1331643	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1331645	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1412081	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1474871	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1884364	0.83[AFR][1000 genomes]
rs2073287	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2144477	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2144478	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2207785	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2224120	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2224121	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2247206	0.81[EUR][1000 genomes]
rs2247211	0.81[EUR][1000 genomes]
rs2247429	0.80[EUR][1000 genomes]
rs2247666	0.81[EUR][1000 genomes]
rs2250387	0.80[EUR][1000 genomes]
rs2254257	0.80[EUR][1000 genomes]
rs2254283	0.80[EUR][1000 genomes]
rs2256998	0.80[EUR][1000 genomes]
rs2265468	0.81[EUR][1000 genomes]
rs2265469	0.81[EUR][1000 genomes]
rs2265471	0.81[EUR][1000 genomes]
rs2265472	0.81[EUR][1000 genomes]
rs2265917	0.81[EUR][1000 genomes]
rs2265918	0.81[EUR][1000 genomes]
rs2265919	0.81[EUR][1000 genomes]
rs2328712	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2474356	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2492855	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2748482	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2748483	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2748484	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2748485	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2748486	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2748487	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2748499	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2748500	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2748502	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2777474	0.84[ASN][1000 genomes]
rs2777476	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2777477	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2777484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2814866	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2814867	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2814869	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2814874	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2814875	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2814876	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2814877	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2892453	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3923579	0.83[EUR][1000 genomes]
rs3924498	0.84[EUR][1000 genomes]
rs3924499	0.84[EUR][1000 genomes]
rs3924502	0.83[EUR][1000 genomes]
rs4075694	0.86[EUR][1000 genomes]
rs4075695	0.84[ASN][1000 genomes]
rs4075696	0.84[ASN][1000 genomes]
rs4243478	0.86[ASN][1000 genomes]
rs4280983	0.87[EUR][1000 genomes]
rs4314514	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4360151	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4391282	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4435956	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4566902	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4896852	0.87[EUR][1000 genomes]
rs56181683	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6570736	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6570738	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6908063	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6910790	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6913797	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6914813	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6917482	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6922507	0.86[EUR][1000 genomes]
rs6923545	0.85[EUR][1000 genomes]
rs6924159	0.86[EUR][1000 genomes]
rs6926076	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6926657	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6930975	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6934467	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6938972	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7739418	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7747576	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7753092	0.85[EUR][1000 genomes]
rs7753696	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7755440	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs864390	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs866473	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9322043	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9322046	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9322047	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9322048	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs932522	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9373485	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9376970	0.85[EUR][1000 genomes]
rs9376971	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9376975	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9386141	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9390365	0.84[EUR][1000 genomes]
rs9390377	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9399569	0.83[EUR][1000 genomes]
rs9399571	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9399573	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9403755	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9403756	0.86[EUR][1000 genomes]
rs9403757	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9403764	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9403765	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403767	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9403768	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9497424	0.82[EUR][1000 genomes]
rs9497425	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9497427	0.84[EUR][1000 genomes]
rs9497431	0.85[EUR][1000 genomes]
rs9497434	0.86[EUR][1000 genomes]
rs9497435	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs969694	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9791313	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1029440	chr6:146349442-146407453	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs854145	RP11-545I5.3	cis	Esophagus Muscularis	GTEx

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146348400-146351400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr6:146348600-146349800	Active TSS	Brain Angular Gyrus	brain
3	chr6:146348600-146351200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
4	chr6:146348600-146351200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
5	chr6:146348600-146351400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr6:146348600-146351400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr6:146348600-146351600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
8	chr6:146348600-146351600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr6:146348800-146349800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr6:146348800-146349800	Active TSS	Brain Anterior Caudate	brain
11	chr6:146348800-146349800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
12	chr6:146348800-146350000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:146348800-146350000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:146348800-146350000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:146348800-146350000	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr6:146348800-146350000	ZNF genes & repeats	Lung	lung
17	chr6:146348800-146350000	Enhancers	Pancreas	Pancrea
18	chr6:146348800-146350200	Active TSS	H9 Cell Line	embryonic stem cell
19	chr6:146348800-146350200	Bivalent/Poised TSS	Fetal Brain Female	brain
20	chr6:146348800-146350400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr6:146348800-146350800	Active TSS	Pancreatic Islets	Pancreatic Islet
22	chr6:146348800-146351200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
23	chr6:146348800-146351400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
24	chr6:146349000-146350000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
25	chr6:146349000-146350400	Bivalent Enhancer	Fetal Muscle Leg	muscle
26	chr6:146349000-146351800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
27	chr6:146349200-146349800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
28	chr6:146349200-146349800	Bivalent Enhancer	Fetal Heart	heart
29	chr6:146349200-146350000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:146349200-146350600	ZNF genes & repeats	Spleen	Spleen
31	chr6:146349400-146349800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:146349400-146349800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:146349400-146349800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:146349400-146349800	Bivalent/Poised TSS	Adipose Nuclei	Adipose
35	chr6:146349400-146349800	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
36	chr6:146349400-146350000	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
37	chr6:146349400-146350600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:146349600-146349800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:146349600-146349800	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:146349600-146349800	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:146349600-146349800	Bivalent Enhancer	Primary B cells from cord blood	blood
42	chr6:146349600-146349800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
43	chr6:146349600-146349800	Bivalent Enhancer	Primary hematopoietic stem cells	blood
44	chr6:146349600-146349800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
45	chr6:146349600-146349800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr6:146349600-146349800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr6:146349600-146349800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:146349600-146349800	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
49	chr6:146349600-146349800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
50	chr6:146349600-146349800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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