Variant report

Variant	rs1884364
Chromosome Location	chr6:146337817-146337818
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146337459..146340301-chr6:146352886..146354448,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10223507	0.85[JPT][hapmap]
rs1062068	0.85[JPT][hapmap]
rs10872580	0.95[JPT][hapmap]
rs13198450	0.93[AFR][1000 genomes]
rs1331636	0.95[AFR][1000 genomes]
rs1331637	0.95[AFR][1000 genomes]
rs2224120	0.85[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs2224121	0.87[AFR][1000 genomes]
rs2247666	0.85[JPT][hapmap]
rs2249386	0.85[JPT][hapmap]
rs2253654	0.85[JPT][hapmap]
rs2253757	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs2485631	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs2748482	0.95[AFR][1000 genomes]
rs2748483	0.82[AFR][1000 genomes]
rs2748499	0.90[AFR][1000 genomes]
rs2777476	0.93[AFR][1000 genomes]
rs2777484	0.83[AFR][1000 genomes]
rs2777485	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2814863	1.00[YRI][hapmap]
rs2814867	0.84[AFR][1000 genomes]
rs2814869	0.86[AFR][1000 genomes]
rs2814874	0.85[JPT][hapmap]
rs2814875	0.85[JPT][hapmap]
rs2814877	0.86[JPT][hapmap]
rs34541797	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3924499	0.85[JPT][hapmap]
rs3924502	0.86[JPT][hapmap]
rs4075694	0.86[JPT][hapmap]
rs4280983	0.86[JPT][hapmap]
rs6570732	0.87[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6912351	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6922507	0.86[JPT][hapmap]
rs6923545	0.85[JPT][hapmap]
rs7746618	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7753092	0.86[JPT][hapmap]
rs7753696	0.86[JPT][hapmap]
rs854145	0.83[AFR][1000 genomes]
rs863820	0.85[JPT][hapmap];1.00[YRI][hapmap]
rs9285508	0.92[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs9376970	0.85[JPT][hapmap]
rs9376975	0.93[AFR][1000 genomes]
rs9386136	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs9390365	0.86[JPT][hapmap]
rs9390374	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390378	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9403749	0.85[JPT][hapmap]
rs9403756	0.85[JPT][hapmap]
rs9403764	0.93[AFR][1000 genomes]
rs9497426	0.89[JPT][hapmap]
rs9497431	0.86[JPT][hapmap]
rs960385	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146337600-146339000	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr6:146337800-146339800	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links