Variant report

Variant	rs2249386
Chromosome Location	chr6:146186611-146186612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146181195..146184700-chr6:146185441..146188238,3	MCF-7	breast:
2	chr6:146183728..146187518-chr6:146188005..146191781,5	K562	blood:

Extended variants
information (count: 245 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:243)

rs_ID	r²[population]
rs1004752	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs1011596	0.96[CEU][hapmap];0.81[GIH][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs1011597	0.96[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10214925	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10223507	0.96[CEU][hapmap];0.87[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs10447449	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1055212	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1062067	0.92[ASW][hapmap];0.92[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1062068	0.92[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1070517	0.80[EUR][1000 genomes]
rs10872580	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11155438	0.80[EUR][1000 genomes]
rs11155442	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1133832	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs11760	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11965018	0.88[EUR][1000 genomes]
rs12190966	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12199362	0.92[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13214277	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1331634	0.92[CEU][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];0.80[TSI][hapmap]
rs1337839	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs1337840	0.86[TSI][hapmap]
rs1337841	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13437042	0.91[EUR][1000 genomes]
rs1415744	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs1415746	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1415747	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1569540	0.88[EUR][1000 genomes]
rs1577916	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1832362	1.00[CEU][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1883365	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs1890171	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1986729	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2050027	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2064185	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2072911	0.83[EUR][1000 genomes]
rs2073287	0.92[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.82[TSI][hapmap]
rs2092263	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs2142978	0.85[JPT][hapmap]
rs2142980	0.85[JPT][hapmap]
rs2142981	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2142983	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs2224120	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs2243665	0.92[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2246334	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2247206	0.83[EUR][1000 genomes]
rs2247211	0.83[EUR][1000 genomes]
rs2247317	0.89[CEU][hapmap];0.82[JPT][hapmap]
rs2247429	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2247666	0.92[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2249147	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2250387	0.92[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2253194	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2253307	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2253648	0.92[CEU][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs2253654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2253757	0.85[JPT][hapmap]
rs2253764	1.00[CEU][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes]
rs2253768	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2253880	0.93[EUR][1000 genomes]
rs2253886	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2253887	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2254257	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2254283	0.96[CEU][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2254288	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs2256998	0.92[ASW][hapmap];0.92[CEU][hapmap];0.95[GIH][hapmap];0.97[LWK][hapmap];0.93[MEX][hapmap];0.80[MKK][hapmap];0.91[TSI][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2265468	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2265469	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2265471	0.96[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs2265472	1.00[CEU][hapmap];0.81[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2265474	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2265477	0.89[CEU][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.88[TSI][hapmap]
rs2265915	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2265916	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2265917	0.92[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2265918	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2265919	0.92[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2328704	0.89[CEU][hapmap]
rs2328707	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2328709	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2485631	0.85[JPT][hapmap]
rs2485632	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2748502	0.88[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap]
rs2777477	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs2814863	0.92[CEU][hapmap];0.93[GIH][hapmap];0.82[TSI][hapmap]
rs2814874	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs2814875	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.88[MEX][hapmap];0.82[TSI][hapmap]
rs2814877	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2814879	0.93[EUR][1000 genomes]
rs2814880	0.95[CEU][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs3811102	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3923579	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3924498	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3924499	0.92[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3924502	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4075694	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4075695	0.89[CEU][hapmap];0.82[JPT][hapmap]
rs4243478	0.89[CEU][hapmap];0.82[JPT][hapmap]
rs4280983	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4314514	0.85[AFR][1000 genomes]
rs4360151	0.96[CEU][hapmap];0.82[JPT][hapmap]
rs4435956	0.90[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4455694	0.88[EUR][1000 genomes]
rs4566902	0.90[AFR][1000 genomes]
rs4895683	0.96[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4895684	0.92[EUR][1000 genomes]
rs4896837	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes]
rs4896838	1.00[CEU][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs4896839	0.88[EUR][1000 genomes]
rs4896841	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4896842	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4896843	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4896844	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4896852	0.82[ASN][1000 genomes]
rs62435810	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570708	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs6570713	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6570715	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6570716	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6570717	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6570719	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6570723	1.00[CEU][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6570724	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6570732	0.81[JPT][hapmap]
rs6900175	0.81[JPT][hapmap]
rs6901888	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes]
rs6902913	0.92[EUR][1000 genomes]
rs6906258	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6906402	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6910790	0.88[AFR][1000 genomes]
rs6915718	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6917135	1.00[CEU][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6917482	0.90[AFR][1000 genomes]
rs6921073	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6922507	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6923545	0.92[ASW][hapmap];0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.93[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6923678	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6924159	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6926076	0.95[CEU][hapmap];0.80[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6926657	0.88[AFR][1000 genomes]
rs6928007	0.91[EUR][1000 genomes]
rs6930154	0.96[CEU][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs6930181	0.82[CEU][hapmap]
rs6931553	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6932863	0.81[EUR][1000 genomes]
rs6933161	0.91[EUR][1000 genomes]
rs6937661	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6941429	0.81[EUR][1000 genomes]
rs697053	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs697054	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs697055	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs697056	0.87[EUR][1000 genomes]
rs702304	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap]
rs702306	0.95[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs702307	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs702314	0.84[EUR][1000 genomes]
rs702316	0.85[JPT][hapmap]
rs702317	0.88[EUR][1000 genomes]
rs702318	1.00[CEU][hapmap];0.85[GIH][hapmap];0.85[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs702319	0.94[JPT][hapmap];0.88[EUR][1000 genomes]
rs702320	0.87[EUR][1000 genomes]
rs702321	0.85[EUR][1000 genomes]
rs702322	0.85[JPT][hapmap]
rs702323	0.85[EUR][1000 genomes]
rs702324	1.00[CEU][hapmap];0.83[GIH][hapmap];0.85[JPT][hapmap];0.81[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs735535	0.86[EUR][1000 genomes]
rs735536	0.86[EUR][1000 genomes]
rs7739735	0.96[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs7740785	0.90[EUR][1000 genomes]
rs7742333	1.00[CEU][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7744014	0.96[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs7745696	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7747576	0.82[AFR][1000 genomes]
rs7752286	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7753092	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7753273	0.85[JPT][hapmap]
rs7753696	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7753770	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7753833	0.91[EUR][1000 genomes]
rs7762562	1.00[CEU][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7772717	0.81[EUR][1000 genomes]
rs857881	0.81[EUR][1000 genomes]
rs863820	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs9373471	0.81[EUR][1000 genomes]
rs9373473	0.82[EUR][1000 genomes]
rs9373475	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9373476	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9376957	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs9376961	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs9376968	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9376970	0.92[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.91[ASN][1000 genomes]
rs9376971	0.96[CEU][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs9386128	0.88[EUR][1000 genomes]
rs9386131	0.92[EUR][1000 genomes]
rs9386132	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9386133	1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9386134	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9386136	0.85[JPT][hapmap]
rs9386141	0.96[CEU][hapmap]
rs9390343	0.88[CEU][hapmap]
rs9390344	0.88[CEU][hapmap]
rs9390348	0.81[EUR][1000 genomes]
rs9390349	0.88[EUR][1000 genomes]
rs9390353	0.82[CEU][hapmap];0.93[CHB][hapmap]
rs9390354	0.92[EUR][1000 genomes]
rs9390355	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9390356	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9390357	0.96[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs9390358	1.00[CEU][hapmap];0.98[GIH][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9390365	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9399561	0.81[EUR][1000 genomes]
rs9399564	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9399565	0.91[EUR][1000 genomes]
rs9399567	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9399571	0.82[AFR][1000 genomes]
rs9403739	0.96[CEU][hapmap];0.83[GIH][hapmap];0.85[JPT][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs9403741	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs9403742	0.89[CEU][hapmap];0.93[CHB][hapmap];0.86[CHD][hapmap];0.84[TSI][hapmap]
rs9403746	0.91[EUR][1000 genomes]
rs9403747	0.88[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs9403749	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9403750	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9403755	0.92[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9403756	0.92[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9403757	0.96[CEU][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs9485017	0.85[JPT][hapmap]
rs9485018	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs9485019	0.87[EUR][1000 genomes]
rs9485021	0.88[EUR][1000 genomes]
rs9485024	1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9497395	0.96[CEU][hapmap];0.81[GIH][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs9497396	0.85[EUR][1000 genomes]
rs9497398	0.82[EUR][1000 genomes]
rs9497401	0.91[EUR][1000 genomes]
rs9497406	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9497419	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9497424	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes]
rs9497425	0.96[CEU][hapmap];0.82[JPT][hapmap]
rs9497427	0.96[CEU][hapmap];0.82[JPT][hapmap]
rs9497431	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9497434	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.97[LWK][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9791313	0.96[CEU][hapmap];0.82[JPT][hapmap]
rs991507	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2249386	SHPRH	cis	cerebellum	SCAN
rs2249386	SHPRH	cis	parietal	SCAN
rs2249386	RP11-545I5.3	cis	Esophagus Muscularis	GTEx

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146172200-146202400	Weak transcription	Adipose Nuclei	Adipose
2	chr6:146177600-146204200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:146181800-146187600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:146182400-146196600	Weak transcription	Fetal Heart	heart
5	chr6:146182600-146187600	Weak transcription	Psoas Muscle	Psoas
6	chr6:146183600-146188800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:146184200-146186800	Enhancers	Primary B cells from cord blood	blood
8	chr6:146184200-146189600	Enhancers	Primary B cells from peripheral blood	blood
9	chr6:146185200-146187600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr6:146185200-146212200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:146185400-146188200	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr6:146186000-146186800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:146186000-146187000	Flanking Active TSS	GM12878-XiMat	blood
14	chr6:146186000-146187600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:146186000-146187600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:146186000-146188600	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr6:146186000-146189200	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr6:146186000-146189600	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr6:146186200-146186800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
20	chr6:146186200-146186800	Enhancers	Duodenum Mucosa	Duodenum
21	chr6:146186200-146187000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:146186200-146187000	Flanking Active TSS	Dnd41	blood
23	chr6:146186200-146188000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:146186200-146188200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr6:146186200-146188400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
26	chr6:146186200-146188600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr6:146186200-146188600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr6:146186400-146187000	Enhancers	HepG2	liver
29	chr6:146186400-146187800	Enhancers	Colon Smooth Muscle	Colon
30	chr6:146186400-146188000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:146186400-146188200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr6:146186400-146188600	Enhancers	Primary hematopoietic stem cells	blood
33	chr6:146186400-146188800	Enhancers	Primary T cells fromperipheralblood	blood
34	chr6:146186400-146189200	Enhancers	Thymus	Thymus
35	chr6:146186400-146189400	Enhancers	Fetal Thymus	thymus
36	chr6:146186400-146213200	Weak transcription	Brain Anterior Caudate	brain
37	chr6:146186600-146186800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:146186600-146186800	Enhancers	Brain Hippocampus Middle	brain
39	chr6:146186600-146187600	Weak transcription	Liver	Liver
40	chr6:146186600-146188200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr6:146186600-146188600	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr6:146186600-146189000	Enhancers	Primary T cells from cord blood	blood

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Variant report

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