Variant report

Variant	rs697053
Chromosome Location	chr6:145989807-145989808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 300 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:300)

rs_ID	r²[population]
rs1004752	0.96[CEU][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs1011596	0.96[CEU][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap]
rs1011597	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs10214925	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10447449	0.82[EUR][1000 genomes]
rs1045820	0.96[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs1055212	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1070516	0.87[EUR][1000 genomes]
rs1070517	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1070518	0.81[ASN][1000 genomes]
rs1070519	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1070520	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10872577	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10872579	1.00[CEU][hapmap];0.81[JPT][hapmap];0.96[EUR][1000 genomes]
rs10872580	0.87[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.82[EUR][1000 genomes]
rs11155433	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11155435	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11155438	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11155442	0.82[EUR][1000 genomes]
rs11965018	0.83[EUR][1000 genomes]
rs12190966	0.81[EUR][1000 genomes]
rs12199362	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs12205752	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12208019	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12208812	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12211884	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1280275	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1280276	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1292333	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1292334	0.87[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1292336	0.96[CEU][hapmap];0.81[JPT][hapmap];0.95[EUR][1000 genomes]
rs1292337	0.96[CEU][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs1292338	0.92[EUR][1000 genomes]
rs1292339	0.89[CEU][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs1337839	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs1337840	0.83[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap]
rs1337841	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13437042	0.80[EUR][1000 genomes]
rs1415744	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1415746	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1415747	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1509213	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1509214	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1569540	0.82[EUR][1000 genomes]
rs1577916	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1832362	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs1883365	0.96[CEU][hapmap];0.81[JPT][hapmap];0.80[EUR][1000 genomes]
rs1890171	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1912023	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1935612	0.91[EUR][1000 genomes]
rs1935616	0.95[EUR][1000 genomes]
rs2050027	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2064185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2092263	0.96[CEU][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs2092295	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2092296	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2092297	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2096201	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2103633	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2142978	0.95[JPT][hapmap]
rs2142980	0.95[JPT][hapmap]
rs2142981	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2142983	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs2179323	0.96[EUR][1000 genomes]
rs2235481	0.89[JPT][hapmap]
rs2246334	0.80[EUR][1000 genomes]
rs2249147	0.81[EUR][1000 genomes]
rs2249386	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs2265474	0.81[EUR][1000 genomes]
rs2265916	0.81[EUR][1000 genomes]
rs2328704	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs2328707	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2328709	0.82[EUR][1000 genomes]
rs35970782	0.91[ASN][1000 genomes]
rs365747	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs365869	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs367065	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs370112	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs370654	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs371186	0.90[EUR][1000 genomes]
rs372904	0.90[EUR][1000 genomes]
rs376257	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs378937	0.87[EUR][1000 genomes]
rs379040	0.90[EUR][1000 genomes]
rs3811102	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs383841	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs385729	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs387376	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs392612	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs398408	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs400329	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs401331	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs401561	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs405206	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs407887	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs408443	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs409553	0.90[EUR][1000 genomes]
rs411785	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs412350	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs414297	0.90[EUR][1000 genomes]
rs414600	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs418701	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs425999	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs426874	0.89[EUR][1000 genomes]
rs427128	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4332001	0.90[EUR][1000 genomes]
rs4335004	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs434318	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs435671	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs436156	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs436498	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs437147	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs439035	0.90[EUR][1000 genomes]
rs440477	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs441290	0.90[EUR][1000 genomes]
rs443628	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4455694	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs446031	0.90[EUR][1000 genomes]
rs446362	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs448258	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs450921	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs451108	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs451699	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs453834	0.90[EUR][1000 genomes]
rs4634475	0.94[EUR][1000 genomes]
rs4895683	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4896820	0.90[EUR][1000 genomes]
rs4896821	0.91[EUR][1000 genomes]
rs4896824	0.92[EUR][1000 genomes]
rs4896829	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4896831	0.89[CEU][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs4896832	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4896833	0.96[CEU][hapmap];0.81[JPT][hapmap];0.96[EUR][1000 genomes]
rs4896837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4896838	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4896839	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4896841	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4896842	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4896843	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4896844	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55810423	0.80[EUR][1000 genomes]
rs621382	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62435810	0.80[EUR][1000 genomes]
rs62438257	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6570692	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6570700	0.92[EUR][1000 genomes]
rs6570701	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570703	0.95[CEU][hapmap];0.80[JPT][hapmap];0.96[EUR][1000 genomes]
rs6570705	0.96[CEU][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs6570706	0.96[EUR][1000 genomes]
rs6570708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570713	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6570715	0.80[EUR][1000 genomes]
rs6570717	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6570719	0.80[EUR][1000 genomes]
rs6570723	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs6570724	0.81[EUR][1000 genomes]
rs6899702	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6899900	0.90[EUR][1000 genomes]
rs6900040	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6900175	0.90[JPT][hapmap]
rs6901888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6902404	0.91[EUR][1000 genomes]
rs6902410	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6903252	0.82[EUR][1000 genomes]
rs6906258	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6906402	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6912079	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6913727	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6914203	0.91[EUR][1000 genomes]
rs6915094	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6915718	0.80[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs6917135	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs6918814	0.81[EUR][1000 genomes]
rs6919684	0.90[EUR][1000 genomes]
rs6921073	0.81[EUR][1000 genomes]
rs6923074	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6923678	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6925594	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6928007	0.80[EUR][1000 genomes]
rs6930154	0.96[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6930181	0.82[CEU][hapmap]
rs6931553	0.81[EUR][1000 genomes]
rs6932863	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6933161	0.80[EUR][1000 genomes]
rs6937661	0.81[EUR][1000 genomes]
rs6941429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs697054	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs697055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs697056	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs702304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702305	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs702306	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702309	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs702314	0.87[EUR][1000 genomes]
rs702316	0.95[JPT][hapmap]
rs702317	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs702318	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs702319	0.83[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs702320	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs702321	0.86[EUR][1000 genomes]
rs702322	0.95[JPT][hapmap]
rs702323	0.86[EUR][1000 genomes]
rs702324	0.87[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs735535	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs735536	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7739735	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap]
rs7742333	0.87[ASW][hapmap];0.96[CEU][hapmap];0.83[GIH][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.80[EUR][1000 genomes]
rs7744014	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap]
rs7745696	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs7746330	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7752286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7753273	0.95[JPT][hapmap]
rs7753770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7755253	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7755586	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7755887	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7762536	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7762562	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs7772286	0.83[EUR][1000 genomes]
rs7772717	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773939	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs857875	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs857877	0.87[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs857879	0.96[CEU][hapmap];0.81[JPT][hapmap];0.96[EUR][1000 genomes]
rs857880	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs857881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs857882	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs857883	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs864148	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs870491	0.92[EUR][1000 genomes]
rs9322028	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9322029	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9373463	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9373464	0.91[EUR][1000 genomes]
rs9373467	0.90[JPT][hapmap]
rs9373471	0.80[EUR][1000 genomes]
rs9373475	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs9373476	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9376945	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9376950	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9376954	0.95[EUR][1000 genomes]
rs9376955	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs9376956	0.96[CEU][hapmap];0.81[JPT][hapmap];0.95[EUR][1000 genomes]
rs9376957	0.96[CEU][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes]
rs9376961	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9376968	0.81[EUR][1000 genomes]
rs9386128	0.83[EUR][1000 genomes]
rs9386132	0.82[EUR][1000 genomes]
rs9386133	1.00[CEU][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.98[TSI][hapmap];0.82[EUR][1000 genomes]
rs9386134	0.81[EUR][1000 genomes]
rs9386136	0.95[JPT][hapmap]
rs9390336	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9390338	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9390343	0.89[CEU][hapmap]
rs9390344	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs9390349	0.83[EUR][1000 genomes]
rs9390353	0.82[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap]
rs9390356	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs9390357	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap]
rs9390358	0.87[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.81[EUR][1000 genomes]
rs9399553	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9399555	0.90[EUR][1000 genomes]
rs9399559	0.96[EUR][1000 genomes]
rs9399561	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399564	0.80[EUR][1000 genomes]
rs9399565	0.80[EUR][1000 genomes]
rs9399567	0.81[EUR][1000 genomes]
rs9403726	0.91[EUR][1000 genomes]
rs9403729	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9403730	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9403731	0.91[EUR][1000 genomes]
rs9403734	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403735	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403737	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403739	0.96[CEU][hapmap];0.86[CHB][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs9403741	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs9403742	0.89[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.89[TSI][hapmap];0.82[ASN][1000 genomes]
rs9403746	0.80[EUR][1000 genomes]
rs9403747	0.89[CEU][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap]
rs9403749	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs9403750	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs9485017	0.95[JPT][hapmap]
rs9485018	0.96[CEU][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs9485019	0.83[EUR][1000 genomes]
rs9485021	0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs9485024	1.00[CEU][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.98[TSI][hapmap];0.82[EUR][1000 genomes]
rs9497357	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9497380	0.96[CEU][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs9497395	0.96[CEU][hapmap];0.96[GIH][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs9497396	0.86[EUR][1000 genomes]
rs9497398	0.82[EUR][1000 genomes]
rs9497401	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9497403	0.89[JPT][hapmap]
rs9497406	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9497419	0.82[EUR][1000 genomes]
rs952405	0.92[EUR][1000 genomes]
rs952406	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs991507	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs697053	SHPRH	cis	cerebellum	SCAN
rs697053	RP11-545I5.3	cis	Esophagus Muscularis	GTEx
rs697053	SHPRH	cis	parietal	SCAN

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145950800-145990600	Weak transcription	Primary B cells from cord blood	blood
2	chr6:145951000-146003000	Weak transcription	Thymus	Thymus
3	chr6:145951400-146003000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:145973600-145990600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:145974200-146002800	Weak transcription	Liver	Liver
6	chr6:145974800-146003600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr6:145980600-146010800	Weak transcription	Right Ventricle	heart
8	chr6:145982800-146003000	Weak transcription	Primary B cells from peripheral blood	blood
9	chr6:145984400-146003000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:145984600-145997600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:145986400-145991000	Weak transcription	Psoas Muscle	Psoas
12	chr6:145986600-146006400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:145987600-146003000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:145988200-146002800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr6:145988400-145990600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:145988400-145993400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:145988400-146003000	Weak transcription	Adipose Nuclei	Adipose
18	chr6:145988400-146003000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr6:145988600-146002800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr6:145988600-146003000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:145988600-146003000	Weak transcription	Brain Substantia Nigra	brain
22	chr6:145989400-145990200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:145989600-145990400	Enhancers	HUVEC	blood vessel
24	chr6:145989600-145991800	Enhancers	Muscle Satellite Cultured Cells	--
25	chr6:145989600-145992600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:145989800-145990200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:145989800-145990600	Enhancers	Rectal Smooth Muscle	rectum
28	chr6:145989800-145991600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:145989800-145991600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:145989800-145991800	Enhancers	NHEK	skin
31	chr6:145989800-146003000	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links