Variant report

Variant	rs9399559
Chromosome Location	chr6:145945778-145945779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 267 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:267)

rs_ID	r²[population]
rs1004752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1011596	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1011597	1.00[CEU][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10214925	0.81[EUR][1000 genomes]
rs1045820	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1055212	0.83[EUR][1000 genomes]
rs1070516	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1070517	0.93[EUR][1000 genomes]
rs1070519	0.93[EUR][1000 genomes]
rs1070520	0.88[EUR][1000 genomes]
rs10872577	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10872579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10872580	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap]
rs11155433	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11155435	0.89[EUR][1000 genomes]
rs11155438	0.96[CEU][hapmap];0.81[JPT][hapmap];0.95[EUR][1000 genomes]
rs11965018	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12199362	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.89[TSI][hapmap]
rs12205752	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12208019	0.89[EUR][1000 genomes]
rs12208812	0.87[EUR][1000 genomes]
rs12211884	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1280275	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1280276	0.86[EUR][1000 genomes]
rs1292333	1.00[CEU][hapmap];0.81[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1292334	1.00[CEU][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1292335	0.82[CEU][hapmap]
rs1292336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1292337	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1292338	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1292339	0.88[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.85[MEX][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1337839	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1337840	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1337841	1.00[CEU][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13437042	0.84[EUR][1000 genomes]
rs1415744	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1415746	0.96[CEU][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs1415747	0.96[CEU][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs1509213	0.81[EUR][1000 genomes]
rs1509214	0.81[EUR][1000 genomes]
rs1569540	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1577916	0.82[EUR][1000 genomes]
rs1883365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1890171	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs1912023	0.83[EUR][1000 genomes]
rs1935612	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1935616	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050027	1.00[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs2064185	1.00[CEU][hapmap];0.80[JPT][hapmap];0.81[EUR][1000 genomes]
rs2072911	0.82[EUR][1000 genomes]
rs2092262	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2092263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2092295	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2092296	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2092297	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2096201	0.86[EUR][1000 genomes]
rs2103633	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2142981	0.81[EUR][1000 genomes]
rs2142983	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2179323	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2328704	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2328707	0.83[EUR][1000 genomes]
rs35970782	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs365747	0.86[EUR][1000 genomes]
rs365869	0.86[EUR][1000 genomes]
rs367065	0.86[EUR][1000 genomes]
rs370112	0.85[EUR][1000 genomes]
rs370654	0.86[EUR][1000 genomes]
rs371186	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs372904	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs376257	0.85[EUR][1000 genomes]
rs378937	0.92[EUR][1000 genomes]
rs379040	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3811102	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs383841	0.85[EUR][1000 genomes]
rs385729	0.85[EUR][1000 genomes]
rs387376	0.83[EUR][1000 genomes]
rs392612	0.86[EUR][1000 genomes]
rs398408	0.81[EUR][1000 genomes]
rs400329	0.86[EUR][1000 genomes]
rs401331	0.86[EUR][1000 genomes]
rs401561	0.85[EUR][1000 genomes]
rs405206	0.86[EUR][1000 genomes]
rs407887	0.86[EUR][1000 genomes]
rs408443	0.86[EUR][1000 genomes]
rs409553	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs411785	0.86[EUR][1000 genomes]
rs414297	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs414600	0.86[EUR][1000 genomes]
rs418701	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs425999	0.83[EUR][1000 genomes]
rs426874	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs427128	0.86[EUR][1000 genomes]
rs4332001	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4335004	0.86[EUR][1000 genomes]
rs434318	0.85[EUR][1000 genomes]
rs435671	0.86[EUR][1000 genomes]
rs436156	0.86[EUR][1000 genomes]
rs436498	0.86[EUR][1000 genomes]
rs437147	0.85[EUR][1000 genomes]
rs439035	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs440477	0.85[EUR][1000 genomes]
rs441290	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs443628	0.84[EUR][1000 genomes]
rs4455694	0.86[EUR][1000 genomes]
rs446031	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs446362	0.86[EUR][1000 genomes]
rs448258	0.86[EUR][1000 genomes]
rs450921	0.86[EUR][1000 genomes]
rs451108	0.85[EUR][1000 genomes]
rs451699	0.86[EUR][1000 genomes]
rs453834	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4634475	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4895683	1.00[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs4895684	0.83[EUR][1000 genomes]
rs4896820	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4896821	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4896824	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4896829	0.88[EUR][1000 genomes]
rs4896831	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4896832	1.00[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4896837	0.96[CEU][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes]
rs4896838	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs4896839	0.86[EUR][1000 genomes]
rs4896841	0.83[EUR][1000 genomes]
rs4896842	0.83[EUR][1000 genomes]
rs4896843	0.83[EUR][1000 genomes]
rs4896844	0.80[EUR][1000 genomes]
rs55810423	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57700188	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs621382	0.82[EUR][1000 genomes]
rs62433835	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62438257	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6570692	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6570700	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6570701	1.00[CEU][hapmap];0.81[JPT][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6570703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570705	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570706	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570708	0.96[CEU][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs6570713	0.80[EUR][1000 genomes]
rs6570715	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6570719	0.84[EUR][1000 genomes]
rs6899702	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6899900	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6900040	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6901888	0.96[CEU][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs6902404	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6902410	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6902913	0.83[EUR][1000 genomes]
rs6903252	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6906258	0.96[CEU][hapmap];0.81[JPT][hapmap];0.80[EUR][1000 genomes]
rs6906402	0.96[CEU][hapmap];0.81[JPT][hapmap];0.80[EUR][1000 genomes]
rs6912079	0.86[EUR][1000 genomes]
rs6913727	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6914203	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6915094	0.86[EUR][1000 genomes]
rs6915718	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs6919684	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6923074	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6923678	0.83[EUR][1000 genomes]
rs6925594	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6928007	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6930154	1.00[CEU][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6932863	0.80[EUR][1000 genomes]
rs6933161	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6941429	0.96[CEU][hapmap];0.81[JPT][hapmap];0.96[EUR][1000 genomes]
rs697053	0.96[CEU][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs697054	0.96[CEU][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs697055	0.96[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs697056	0.87[EUR][1000 genomes]
rs702304	0.96[CEU][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs702305	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs702306	0.91[CEU][hapmap];0.80[JPT][hapmap];0.95[EUR][1000 genomes]
rs702307	0.96[CEU][hapmap];0.81[JPT][hapmap];0.94[EUR][1000 genomes]
rs702309	0.90[EUR][1000 genomes]
rs702314	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs702315	0.84[AMR][1000 genomes]
rs702317	0.86[EUR][1000 genomes]
rs702318	0.96[CEU][hapmap];0.96[GIH][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs702319	1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs702320	0.85[EUR][1000 genomes]
rs702321	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs702323	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs702324	0.96[CEU][hapmap];0.93[GIH][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs735535	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs735536	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7739735	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap];0.83[EUR][1000 genomes]
rs7744014	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap];0.83[EUR][1000 genomes]
rs7746330	0.87[EUR][1000 genomes]
rs7752286	0.96[CEU][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes]
rs7753770	0.96[CEU][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs7755253	0.85[EUR][1000 genomes]
rs7755586	0.83[EUR][1000 genomes]
rs7755887	0.84[EUR][1000 genomes]
rs7762536	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7772286	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7772717	0.96[EUR][1000 genomes]
rs7773939	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs857875	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs857877	1.00[CEU][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs857879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs857880	1.00[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs857881	0.96[CEU][hapmap];0.81[JPT][hapmap];0.96[EUR][1000 genomes]
rs857882	1.00[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs857883	1.00[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs864148	0.94[EUR][1000 genomes]
rs870491	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9322028	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9322029	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9373463	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9373464	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9373471	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9373475	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.89[TSI][hapmap]
rs9373476	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9376945	0.86[EUR][1000 genomes]
rs9376950	0.87[EUR][1000 genomes]
rs9376954	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376955	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9376961	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9386128	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9386131	0.83[EUR][1000 genomes]
rs9386133	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap]
rs9390336	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9390338	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9390343	0.92[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.80[AMR][1000 genomes]
rs9390344	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9390348	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9390349	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9390354	0.83[EUR][1000 genomes]
rs9390355	0.83[EUR][1000 genomes]
rs9390356	0.96[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.89[TSI][hapmap]
rs9390357	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap]
rs9390358	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap]
rs9399553	0.86[EUR][1000 genomes]
rs9399555	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9399561	0.96[CEU][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs9399564	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9399565	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9403726	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9403729	0.87[EUR][1000 genomes]
rs9403730	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9403731	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9403734	0.87[EUR][1000 genomes]
rs9403735	0.88[EUR][1000 genomes]
rs9403737	1.00[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9403739	0.88[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9403741	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9403742	0.88[ASW][hapmap];0.93[CEU][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap]
rs9403746	0.84[EUR][1000 genomes]
rs9403747	0.88[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.94[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs9485018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9485019	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9485021	0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9485024	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.82[YRI][hapmap]
rs9497357	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9497380	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9497395	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9497396	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9497401	0.83[EUR][1000 genomes]
rs9497406	0.83[EUR][1000 genomes]
rs952405	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs952406	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs991507	0.81[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9399559	SHPRH	cis	cerebellum	SCAN
rs9399559	RP11-545I5.3	cis	Esophagus Muscularis	GTEx
rs9399559	SHPRH	cis	parietal	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145924400-145948200	Weak transcription	Left Ventricle	heart
2	chr6:145934200-145948000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:145937600-145952000	Weak transcription	Psoas Muscle	Psoas
4	chr6:145939800-145948400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:145941600-145954200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:145942400-145955400	Weak transcription	Esophagus	oesophagus
7	chr6:145943200-145947800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:145943200-145948200	Weak transcription	Fetal Stomach	stomach
9	chr6:145943200-145948200	Weak transcription	Pancreas	Pancrea
10	chr6:145943600-145947600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr6:145943600-145948400	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:145943800-145948200	Weak transcription	Right Ventricle	heart
13	chr6:145944200-145949800	Weak transcription	GM12878-XiMat	blood
14	chr6:145944400-145948000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:145945000-145948200	Weak transcription	Aorta	Aorta
16	chr6:145945200-145946800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:145945200-145950200	Weak transcription	Primary B cells from cord blood	blood
18	chr6:145945200-145955400	Weak transcription	Fetal Muscle Leg	muscle
19	chr6:145945400-145948200	Weak transcription	Thymus	Thymus
20	chr6:145945400-145949000	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr6:145945600-145947800	Weak transcription	Brain Anterior Caudate	brain
22	chr6:145945600-145948000	Weak transcription	Brain Substantia Nigra	brain
23	chr6:145945600-145948000	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links